Comments (2)
skoren
commented on August 22, 2024
I'm not sure what you are asking, you want the install to work faster? metAMOS will pick up most tools from the users path so if you already have the dependencies installed, you can run the provided INSTALL.py script to set everything up and then just package that result.
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avrixtor
commented on August 22, 2024
Do you guys have a metAMOS Docker image ready to run python INSTALL.py iMetAMOS? If not, we are working on it so that it works with as most functions as possible. So far we cannot get Test to work with -f Assemble,MapReads,Propagate,Abundance,Validate starting FROM ml642810/metamos:v1. It cannot even finish INSTALL.py iMetAMOS
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Related Issues (20)
- Some html reports are empty after running HOT 1
- Run test_phylosift.sh error HOT 9
- rm: cannot remove `~/all.seq.mates': No such file or directory HOT 2
- Some questions about the DB
- RunPipeline: project dir does not exist! HOT 1
- Deprecated dependencies HOT 1
- Failed at PREPROCESS with error code -6 HOT 2
- How to configure the settings for different tools
- Error when running run_pipeline_test.sh (FragGeneScan, exit code -11) HOT 1
- syntax error when execute python2 INSTALL.py core
- Steps to skip
- not recognizing changes to parameters HOT 2
- **ERROR** All input sequences were empty HOT 4
- python INSTALL.py error HOT 1
- Install Phylosift Issue
- Assembly always runs out of memory
- [REAPR pipeline] Error opening file for writing ... task_pipeline.pl line 112. HOT 1
- metAMOS INSTALL.py error HOT 3
- metamos install error
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