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senukobla avatar senukobla commented on August 22, 2024

having the same issue. how did you resolve it ?

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skoren avatar skoren commented on August 22, 2024

The above error indicates cython 3 is the default:

/mnt/efs/fangyuan/metamos/metAMOS-1.5rc3/Utilities/python/lib/python/Cython-3.0a6-py3.6-linux-x86_64.egg/Cython/Compiler/Main.py:344: FutureWarning: Cython directive
'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /mnt/efs/fangyuan/metamos/metAMOS-1.5rc3/src/scaffold.py
tree = Parsing.p_module(s, pxd, full_module_name)

metAMOS requires python v2 and cython v2 as well. It looks like you didn't completely switch to python2 on the system.

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etiennedanis avatar etiennedanis commented on August 22, 2024

Hi Sergey,
I installed python 2.7.14 in a conda environment, installed psutil 0.6.1 (had issues with psutil) and I got the same error message described above. The cython version coming with python 2.7.14 in the conda environment is: 0.29.21.
I installed cython 0.25.2 and still got the same error message.
Which version of cython do you recommend?
Which version of python and cython do you use (I could not find the version 2.7.3 of python)?
Any other advice for a complete switch to python2?

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