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seqera-kit

Python implementation for automated pipeline launching through Tower CLI (beta)

shpc-registry

Testing a remote registry for Singularity Registry HPC

shpc-registry-cache

A cache of commands (currently for biocontainers)

shpc_doc

brief user guide for SHPC, aimed at facility support staff

singularity

SingularityCE is the Community Edition of Singularity, an open source container platform designed to be simple, fast, and secure.

singularity-containers

Webinars&Tutorial on Containers on HPC and Cloud with Singularity

singularity-hpc

Local filesystem registry for Singularity containers (intended for HPC) using LMOD. Works for users and admins.

spack

A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

spack-configs

Share Spack configuration files with other HPC sites

streamflow

StreamFlow Workflow Manager

supercomputing-user-training

Code materials for Pawsey Supercomputing User Training

swarm

Swarm is a script designed to simplify submitting a group of commands to the Biowulf cluster.

tinker-openmm-plumed

STALLED - NOT WORKING YET -- Tinker interface to an Openmm+Plumed installation

tower-agent

Agent app that allows connecting remote batch schedulers to Tower Cloud

tower-cli

Nextflow Tower CLI tool

toy-acacia-nf

Toy pipeline to test Nextflow with Acacia (S3 Object Storage) at Pawsey

toy-amd-rng

Toy repo to test the AMD RNG library

toy-cowsay-nf

Toy pipeline for simple Nextflow tests

toy-gpu-nf

Toy pipeline to test Nextflow with Nvidia GPUs on Topaz at Pawsey

toy-pipelines

toy-quantum-qb-nf

Toy pipeline to run Quantum Computing simulations using Qristal by Quantum Brilliance

toy-shpc-nf

Toy RNAseq pipeline, to test interplay of Nextflow with SHPC container modules

trinity-nf

Trinity assembly pipeline for BioCommons / USydney Informatics Hub - Nextflow porting

uwa-hw

Repo for Hayden Walker's Uptake Project

vscode-language-nextflow

Nextflow language support for Visual Studio Editor

wave

On-demand containers provisioning service

wave-cli

Command line tool for Wave containers provisioning service

wrappie

BETA - A tool for automated deployment of applications using containers, bash wrappers and modules