Alignment of genomic sequences using the Needleman-Wunsch algorithm (global alignment) or the Smith-Waterman algorithm (local alignment).
To build: Just call make
For a global DNA alignment:
./Alignment TACTACCAGA TACTAGGGGG
For a global RNA alignment:
./Alignment UACUAGCCAGA UACUAGGGG
For a local alignment: ./Alignment -l TAC AAAAAAAAAAGGGTACTTTT