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A ToolKit library for deal.II

Home Page: http://mathlab.github.io/deal2lkit

License: GNU Lesser General Public License v2.1

CMake 19.16% Shell 3.08% C++ 77.66% Makefile 0.09%

c-plus-plus cmake dealii doxygen finite-element-analysis

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deal2lkit's Issues

Make deal2lkit require CXX11 by default

I thought for a while about this, but there are a lot features which I think we should use by default instead of guarding for CXX11 all times.

What do you all think about this?

This would make all constructors much cleaner, instead of requiring, for example, an additional string for each parameter, we would just use std::to_str(param) (CXX11 only), and use a default value for param in the constructor, instead of the default value for the string associated to the param...

Fix ParsedDirichletBCs

At the moment, ParsedDirichletBCs works only for codimension 0, and for dimension > 1. This should be fixed.

Codimension 1
Dimension = 1, spacedim>1

poisson example is missing the .prm file

Make the constructors uniform!

Our constructors, derived from ParameterAcceptor, all take default values. Some of them take as default values the strings representing the values, some of them take as default values the actual values.

We should be consistent. Taking the strings makes one passage easier, but it increases the number of member variables for no reasons (the default value should be stored in the variable itself).

Remove D2K_NAMESPACE_OPEN from doxygen documentation

I don't know how deal.II does it, but we should expand this macro...

Add support for DataPostProcessor

The ParsedDataOut class does not have a member function add_data_vector which accepts a DataPostprocessor. This should be added, so that compatibility one-to-one can be ensured with DataOut.

template <typename DH>
void add_data_vector (const VECTOR &data, 
                       const DataPostprocessor< DH::space_dimension > &data_postprocessor, etc. etc.);

Add ParsedQuadrature

Save prm file using ParsedDataOut

At the moment, it is possible to save each run in a different folder using incremental_run_prefix.
It would be useful to save the prm file in the same folder at the same time.

Paper deal2lkit todos

ParsedGridGenerator for Triangulation<1,3>

At the moment Triangulation<1,3> is not instantiated, because of some issues with PGGHelper that should be fixed for this case.

Warnings 2

/home/heltai/src/deal2lkit/source/parsed_quadrature.cc:32:3: warning: extra ‘;’ [-Wpedantic]
 {};
   ^
/home/heltai/src/deal2lkit/source/parsed_quadrature.cc:57:2: warning: extra ‘;’ [-Wpedantic]
 };

Warnings

Remove all these warnings:

./source/parsed_grid_generator.cc:63:3: warning: field 'str_un_int' will be initialized after field 'str_double_1' [-Wreorder]
  str_un_int(_int),
  ^
../source/parsed_grid_generator.cc:376:27: note: in instantiation of member function 'deal2lkit::ParsedGridGenerator<1, 1>::ParsedGridGenerator' requested here
template class deal2lkit::ParsedGridGenerator<1,1>;
                          ^
../source/parsed_grid_generator.cc:65:3: warning: field 'str_double_2' will be initialized after field 'str_bool' [-Wreorder]
  str_double_2(_double_2),
  ^
../source/parsed_grid_generator.cc:63:3: warning: field 'str_un_int' will be initialized after field 'str_double_1' [-Wreorder]
  str_un_int(_int),
  ^
../source/parsed_grid_generator.cc:377:27: note: in instantiation of member function 'deal2lkit::ParsedGridGenerator<1, 2>::ParsedGridGenerator' requested here
template class deal2lkit::ParsedGridGenerator<1,2>;
                          ^
../source/parsed_grid_generator.cc:65:3: warning: field 'str_double_2' will be initialized after field 'str_bool' [-Wreorder]
  str_double_2(_double_2),
  ^
../source/parsed_grid_generator.cc:63:3: warning: field 'str_un_int' will be initialized after field 'str_double_1' [-Wreorder]
  str_un_int(_int),
  ^
../source/parsed_grid_generator.cc:378:27: note: in instantiation of member function 'deal2lkit::ParsedGridGenerator<2, 2>::ParsedGridGenerator' requested here
template class deal2lkit::ParsedGridGenerator<2,2>;
                          ^
../source/parsed_grid_generator.cc:65:3: warning: field 'str_double_2' will be initialized after field 'str_bool' [-Wreorder]
  str_double_2(_double_2),
  ^
../source/parsed_grid_generator.cc:63:3: warning: field 'str_un_int' will be initialized after field 'str_double_1' [-Wreorder]
  str_un_int(_int),
  ^
../source/parsed_grid_generator.cc:379:27: note: in instantiation of member function 'deal2lkit::ParsedGridGenerator<2, 3>::ParsedGridGenerator' requested here
template class deal2lkit::ParsedGridGenerator<2,3>;
                          ^
../source/parsed_grid_generator.cc:65:3: warning: field 'str_double_2' will be initialized after field 'str_bool' [-Wreorder]
  str_double_2(_double_2),
  ^
../source/parsed_grid_generator.cc:63:3: warning: field 'str_un_int' will be initialized after field 'str_double_1' [-Wreorder]
  str_un_int(_int),
  ^
../source/parsed_grid_generator.cc:380:27: note: in instantiation of member function 'deal2lkit::ParsedGridGenerator<3, 3>::ParsedGridGenerator' requested here
template class deal2lkit::ParsedGridGenerator<3,3>;
                          ^
../source/parsed_grid_generator.cc:65:3: warning: field 'str_double_2' will be initialized after field 'str_bool' [-Wreorder]
  str_double_2(_double_2),
  ^
10 warnings generated.
[23/25] Building CXX object CMakeFiles/deal2lkit.g.dir/source/parsed_grid_generator.cc.o
../source/parsed_grid_generator.cc:63:3: warning: field 'str_un_int' will be initialized after field 'str_double_1' [-Wreorder]
  str_un_int(_int),
  ^
../source/parsed_grid_generator.cc:376:27: note: in instantiation of member function 'deal2lkit::ParsedGridGenerator<1, 1>::ParsedGridGenerator' requested here
template class deal2lkit::ParsedGridGenerator<1,1>;
                          ^
../source/parsed_grid_generator.cc:65:3: warning: field 'str_double_2' will be initialized after field 'str_bool' [-Wreorder]
  str_double_2(_double_2),
  ^
../source/parsed_grid_generator.cc:63:3: warning: field 'str_un_int' will be initialized after field 'str_double_1' [-Wreorder]
  str_un_int(_int),
  ^
../source/parsed_grid_generator.cc:377:27: note: in instantiation of member function 'deal2lkit::ParsedGridGenerator<1, 2>::ParsedGridGenerator' requested here
template class deal2lkit::ParsedGridGenerator<1,2>;
                          ^
../source/parsed_grid_generator.cc:65:3: warning: field 'str_double_2' will be initialized after field 'str_bool' [-Wreorder]
  str_double_2(_double_2),
  ^
../source/parsed_grid_generator.cc:63:3: warning: field 'str_un_int' will be initialized after field 'str_double_1' [-Wreorder]
  str_un_int(_int),
  ^
../source/parsed_grid_generator.cc:378:27: note: in instantiation of member function 'deal2lkit::ParsedGridGenerator<2, 2>::ParsedGridGenerator' requested here
template class deal2lkit::ParsedGridGenerator<2,2>;
                          ^
../source/parsed_grid_generator.cc:65:3: warning: field 'str_double_2' will be initialized after field 'str_bool' [-Wreorder]
  str_double_2(_double_2),
  ^
../source/parsed_grid_generator.cc:63:3: warning: field 'str_un_int' will be initialized after field 'str_double_1' [-Wreorder]
  str_un_int(_int),
  ^
../source/parsed_grid_generator.cc:379:27: note: in instantiation of member function 'deal2lkit::ParsedGridGenerator<2, 3>::ParsedGridGenerator' requested here
template class deal2lkit::ParsedGridGenerator<2,3>;
                          ^
../source/parsed_grid_generator.cc:65:3: warning: field 'str_double_2' will be initialized after field 'str_bool' [-Wreorder]
  str_double_2(_double_2),
  ^
../source/parsed_grid_generator.cc:63:3: warning: field 'str_un_int' will be initialized after field 'str_double_1' [-Wreorder]
  str_un_int(_int),
  ^
../source/parsed_grid_generator.cc:380:27: note: in instantiation of member function 'deal2lkit::ParsedGridGenerator<3, 3>::ParsedGridGenerator' requested here
template class deal2lkit::ParsedGridGenerator<3,3>;
                          ^
../source/parsed_grid_generator.cc:65:3: warning: field 'str_double_2' will be initialized after field 'str_bool' [-Wreorder]
  str_double_2(_double_2),

Add ParsedNewtonSolver

Add an interface to Trilinos::NOX objects.

Name to ErrorHandler

Add optional name to ErrorHandler.

Add cheese grid

There is a missing grid: cheese

https://www.dealii.org/developer/doxygen/deal.II/namespaceGridGenerator.html#a76c54698f4666a44ac3982ee62f87ee9

should we use X.Y.Z-[pre-rc] for numbering deal2lkit?

should we adopt the same numbering convention as deal.II ?
dealii/dealii#1774

Use ParsedSolver in examples

We have a ParsedSolver class which is not used in the examples.

run_dir as parameter in Parsed DataOut

At the moment, the argument run_dir, which is passed at build time to ParsedDataOut, does not appear in the parameter file, making it impossible for users to disable, at run time, the creation of one directory per execution.

This, among other things, makes it impossible to write non-failing tests, since ParsedDataOut will log in deallog where it's going to write, and this will change at every run.

run_dir should become a member variable, and the code which is now in the constructor should be put inside the virtual function parse_parameters_call_back(), which is called automatically by ParameterAcceptor any time a parameter file is parsed.

Add this line in declare_parameters():

  add_parameter(prm, &base_name, "Incremental run prefix", run_dir, Patterns::Anything());

after you added run_dir as a member variable of ParsedDataOut.

You will also have to copy all new outputs to their tests/*output counterpart....

Component Interpretation in ParsedDataOut

The function add_data_vector in DataOut accepts also a DataComponentInterpretation.

Our ParsedDataOut doesn't. We should add one which automatically uses the names passed using the parameters.

For example: names = u,u,p, then the first two components should be part_of_a_vector:

https://www.dealii.org/8.2.1/doxygen/deal.II/namespaceDataComponentInterpretation.html

Documentation and cleanup

The library is growing, and the documentation is getting smaller and smaller...

We should take some time and document all used classes. Also we should remove all unused classes.

Guard against MPI

In ParsedGridGenerator, we should guard against availability of MPI.

define class for nietsche BCs

enrich parsed_dirichlet_BC

normal components -- see #113
tangential components

Add all other meshes that can be generated

There are still a number of meshes that can be generated. We should add them.

Move sundials interface here.

Cannot find Boost libraries (CMake 2.8.12.2)

CMake 2.8.12.2 is unable to find Boost libraries until I replace
FIND_PACKAGE(BOOST)
with
FIND_PACKAGE(Boost)

Mean Pressure Constraint

Add a tool to handle mean pressure constraint for fluid dynamic.

new name for `SAKData`

any suggestions? @luca-heltai @nicola-giuliani @ESeNonFossiIo

Run also tests with MPI

At the moment Travis only runs debug and release tests with clang. We should also run the mpi versions for both release and debug.

Add Coupling field to ParsedFiniteElement

Parsed Finite Element should have a parameter to get the coupling of the various components (or blocks).

Say, for example (using block-wise coupling):

Finite element space = FESystem[FE_Q(2)^2-FE_Q(1)]
Blocking of the finite element = u, u, p
Coupling = 1, 1; 1, 0

also allowed should be

Finite element space = FESystem[FE_Q(2)^2-FE_Q(1)]
Blocking of the finite element = u, u, p
Coupling = 1, 1, 1; 1, 1, 1; 1, 1, 0

using component-wise coupling (for finer control).

This should be used instead of the following code:

 Table<2,DoFTools::Coupling> coupling (dim+1, dim+1);
  for (unsigned int c=0; c<dim+1; ++c)
    for (unsigned int d=0; d<dim+1; ++d)
      if (! ((c==dim) && (d==dim)))
        coupling[c][d] = DoFTools::always;
      else
        coupling[c][d] = DoFTools::none;

  DoFTools::make_sparsity_pattern (*dof_handler,
                                   coupling, sp,
                                   constraints, false,
                                   Utilities::MPI::
                                   this_mpi_process(MPI_COMM_WORLD));

which should become

 Table<2,DoFTools::Coupling> coupling  = fe_builder.get_coupling();
  DoFTools::make_sparsity_pattern (*dof_handler,
                                   coupling, sp,
                                   constraints, false,
                                   Utilities::MPI::
                                   this_mpi_process(MPI_COMM_WORLD));

Change exception for ParameterAcceptor when trying to parse to a const.

When declaring a class as the following:

class MyClass : public ParameterAcceptor {
   virtual void declare_parameters(prm) {
      add_parameter(prm, &var, ...);
   }

  const some_type var;

}

the default implementation of parse_parameters throws an exception of ExcNotImplemented().

The default should first check if the variable is const, and if it is, it should throw a different exception. The above is misleading...

CMake should automatically set all possible external libraries to ON

At the moment, even if SUNDIALS_DIR is set correctly, D2K does not enable sundials by default. The default should be ON.

Warnings

/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘unsigned int deal2lkit::IDAInterface<VEC>::start_ode(VEC&, VEC&, unsigned int) [with VEC = dealii::BlockVector<double>]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:532:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:374:18: warning: variable ‘frac’ set but not used [-Wunused-but-set-variable]
           double frac = 0;
                  ^
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘unsigned int deal2lkit::IDAInterface<VEC>::start_ode(VEC&, VEC&, unsigned int) [with VEC = dealii::TrilinosWrappers::MPI::Vector]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:537:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:374:18: warning: variable ‘frac’ set but not used [-Wunused-but-set-variable]
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘unsigned int deal2lkit::IDAInterface<VEC>::start_ode(VEC&, VEC&, unsigned int) [with VEC = dealii::TrilinosWrappers::MPI::BlockVector]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:538:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:374:18: warning: variable ‘frac’ set but not used [-Wunused-but-set-variable]
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_lsetup(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::BlockVector<double>; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:495:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::BlockVector<double>]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:532:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp1’ [-Wunused-parameter]
 int t_dae_lsetup(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp2’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp3’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_solve(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::BlockVector<double>; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:496:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::BlockVector<double>]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:532:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:173:5: warning: unused parameter ‘weight’ [-Wunused-parameter]
 int t_dae_solve(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_lsetup(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::TrilinosWrappers::MPI::Vector; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:495:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::TrilinosWrappers::MPI::Vector]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:537:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp1’ [-Wunused-parameter]
 int t_dae_lsetup(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp2’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp3’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_solve(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::TrilinosWrappers::MPI::Vector; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:496:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::TrilinosWrappers::MPI::Vector]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:537:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:173:5: warning: unused parameter ‘weight’ [-Wunused-parameter]
 int t_dae_solve(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_lsetup(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::TrilinosWrappers::MPI::BlockVector; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:495:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::TrilinosWrappers::MPI::BlockVector]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:538:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp1’ [-Wunused-parameter]
 int t_dae_lsetup(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp2’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp3’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_solve(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::TrilinosWrappers::MPI::BlockVector; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:496:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::TrilinosWrappers::MPI::BlockVector]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:538:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:173:5: warning: unused parameter ‘weight’ [-Wunused-parameter]
 int t_dae_solve(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘unsigned int deal2lkit::IDAInterface<VEC>::start_ode(VEC&, VEC&, unsigned int) [with VEC = dealii::BlockVector<double>]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:532:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:374:18: warning: variable ‘frac’ set but not used [-Wunused-but-set-variable]
           double frac = 0;
                  ^
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘unsigned int deal2lkit::IDAInterface<VEC>::start_ode(VEC&, VEC&, unsigned int) [with VEC = dealii::TrilinosWrappers::MPI::Vector]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:537:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:374:18: warning: variable ‘frac’ set but not used [-Wunused-but-set-variable]
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘unsigned int deal2lkit::IDAInterface<VEC>::start_ode(VEC&, VEC&, unsigned int) [with VEC = dealii::TrilinosWrappers::MPI::BlockVector]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:538:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:374:18: warning: variable ‘frac’ set but not used [-Wunused-but-set-variable]
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_lsetup(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::BlockVector<double>; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:495:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::BlockVector<double>]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:532:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp1’ [-Wunused-parameter]
 int t_dae_lsetup(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp2’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp3’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_solve(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::BlockVector<double>; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:496:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::BlockVector<double>]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:532:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:173:5: warning: unused parameter ‘weight’ [-Wunused-parameter]
 int t_dae_solve(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_lsetup(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::TrilinosWrappers::MPI::Vector; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:495:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::TrilinosWrappers::MPI::Vector]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:537:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp1’ [-Wunused-parameter]
 int t_dae_lsetup(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp2’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp3’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_solve(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::TrilinosWrappers::MPI::Vector; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:496:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::TrilinosWrappers::MPI::Vector]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:537:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:173:5: warning: unused parameter ‘weight’ [-Wunused-parameter]
 int t_dae_solve(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_lsetup(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::TrilinosWrappers::MPI::BlockVector; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:495:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::TrilinosWrappers::MPI::BlockVector]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:538:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp1’ [-Wunused-parameter]
 int t_dae_lsetup(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp2’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp3’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_solve(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::TrilinosWrappers::MPI::BlockVector; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:496:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::TrilinosWrappers::MPI::BlockVector]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:538:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:173:5: warning: unused parameter ‘weight’ [-Wunused-parameter]
 int t_dae_solve(IDAMem IDA_mem,

Make NewtonArgument templated on vector type

Warnings 3

/extra/luca/codes/eigen-laplace/source/eigen_problem.cc: In instantiation of ‘void EigenProblem<dim>::assemble_system() [with int dim = 2]’:
/extra/luca/codes/eigen-laplace/source/eigen_problem.cc:303:16:   required from here
/extra/luca/codes/eigen-laplace/source/eigen_problem.cc:136:24: warning: unused variable ‘n_face_q_points’ [-Wunused-variable]
   const unsigned int   n_face_q_points = face_quadrature_formula.size();
                        ^

Make ParsedGridGenerator take care of manifolds

There should be an additional parameter:

set Attach default manifold descriptors = true

which should fill, for each mesh that supports it, the map

std::map<types::manifold_id, shared_ptr<Manifold<dim,spacedim> > > manifold_descriptors;

and set the corresponding manifold_ids on the boundaries.

An additional method which returns a reference to the map:

pgg.get_manifold_descriptors();

This map will be empty if the above bool is false. It should contain all manifold_descriptors otherwise.

Moreover, there should be another three parameters:

set Copy boundary ids and material ids over manifold ids = true
set External domain manifold descriptors = 0=file0.iges; 1=file1.iges
set External boundary manifold descriptors = 2=file2.iges; 3=file3.iges

which should generate manifold_descriptors using the OpenCascade interface (if supported!) and attach them to the Triangulation.

Parsed Mapped Functions should split on a different character than `,`

Remove useless parameters from data out?

ParsedDataOut now fills up a lot space in prm, due to the fact that we call declare and parse of the underlying deal.II class.

Should we remove the unused entries?

Warnings 3

/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘unsigned int deal2lkit::IDAInterface<VEC>::start_ode(VEC&, VEC&, unsigned int) [with VEC = dealii::BlockVector<double>]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:532:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:374:18: warning: variable ‘frac’ set but not used [-Wunused-but-set-variable]
           double frac = 0;
                  ^
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘unsigned int deal2lkit::IDAInterface<VEC>::start_ode(VEC&, VEC&, unsigned int) [with VEC = dealii::TrilinosWrappers::MPI::Vector]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:537:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:374:18: warning: variable ‘frac’ set but not used [-Wunused-but-set-variable]
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘unsigned int deal2lkit::IDAInterface<VEC>::start_ode(VEC&, VEC&, unsigned int) [with VEC = dealii::TrilinosWrappers::MPI::BlockVector]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:538:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:374:18: warning: variable ‘frac’ set but not used [-Wunused-but-set-variable]
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_lsetup(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::BlockVector<double>; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:495:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::BlockVector<double>]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:532:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp1’ [-Wunused-parameter]
 int t_dae_lsetup(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp2’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp3’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_solve(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::BlockVector<double>; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:496:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::BlockVector<double>]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:532:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:173:5: warning: unused parameter ‘weight’ [-Wunused-parameter]
 int t_dae_solve(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_lsetup(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::TrilinosWrappers::MPI::Vector; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:495:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::TrilinosWrappers::MPI::Vector]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:537:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp1’ [-Wunused-parameter]
 int t_dae_lsetup(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp2’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp3’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_solve(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::TrilinosWrappers::MPI::Vector; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:496:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::TrilinosWrappers::MPI::Vector]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:537:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:173:5: warning: unused parameter ‘weight’ [-Wunused-parameter]
 int t_dae_solve(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_lsetup(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::TrilinosWrappers::MPI::BlockVector; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:495:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::TrilinosWrappers::MPI::BlockVector]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:538:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp1’ [-Wunused-parameter]
 int t_dae_lsetup(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp2’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp3’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_solve(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::TrilinosWrappers::MPI::BlockVector; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:496:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::TrilinosWrappers::MPI::BlockVector]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:538:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:173:5: warning: unused parameter ‘weight’ [-Wunused-parameter]
 int t_dae_solve(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘unsigned int deal2lkit::IDAInterface<VEC>::start_ode(VEC&, VEC&, unsigned int) [with VEC = dealii::BlockVector<double>]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:532:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:374:18: warning: variable ‘frac’ set but not used [-Wunused-but-set-variable]
           double frac = 0;
                  ^
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘unsigned int deal2lkit::IDAInterface<VEC>::start_ode(VEC&, VEC&, unsigned int) [with VEC = dealii::TrilinosWrappers::MPI::Vector]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:537:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:374:18: warning: variable ‘frac’ set but not used [-Wunused-but-set-variable]
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘unsigned int deal2lkit::IDAInterface<VEC>::start_ode(VEC&, VEC&, unsigned int) [with VEC = dealii::TrilinosWrappers::MPI::BlockVector]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:538:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:374:18: warning: variable ‘frac’ set but not used [-Wunused-but-set-variable]
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_lsetup(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::BlockVector<double>; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:495:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::BlockVector<double>]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:532:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp1’ [-Wunused-parameter]
 int t_dae_lsetup(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp2’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp3’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_solve(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::BlockVector<double>; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:496:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::BlockVector<double>]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:532:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:173:5: warning: unused parameter ‘weight’ [-Wunused-parameter]
 int t_dae_solve(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_lsetup(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::TrilinosWrappers::MPI::Vector; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:495:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::TrilinosWrappers::MPI::Vector]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:537:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp1’ [-Wunused-parameter]
 int t_dae_lsetup(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp2’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp3’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_solve(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::TrilinosWrappers::MPI::Vector; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:496:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::TrilinosWrappers::MPI::Vector]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:537:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:173:5: warning: unused parameter ‘weight’ [-Wunused-parameter]
 int t_dae_solve(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_lsetup(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::TrilinosWrappers::MPI::BlockVector; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:495:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::TrilinosWrappers::MPI::BlockVector]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:538:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp1’ [-Wunused-parameter]
 int t_dae_lsetup(IDAMem IDA_mem,
     ^
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp2’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc:144:5: warning: unused parameter ‘tmp3’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/ida_interface.cc: In instantiation of ‘int deal2lkit::t_dae_solve(IDAMem, N_Vector, N_Vector, N_Vector, N_Vector, N_Vector) [with VEC = dealii::TrilinosWrappers::MPI::BlockVector; IDAMem = IDAMemRec*; N_Vector = _generic_N_Vector*]’:
/home/heltai/src/deal2lkit/source/ida_interface.cc:496:23:   required from ‘void deal2lkit::IDAInterface<VEC>::reset_ode(double, VEC&, VEC&, double, unsigned int, bool) [with VEC = dealii::TrilinosWrappers::MPI::BlockVector]’
/home/heltai/src/deal2lkit/source/ida_interface.cc:538:27:   required from here
/home/heltai/src/deal2lkit/source/ida_interface.cc:173:5: warning: unused parameter ‘weight’ [-Wunused-parameter]
 int t_dae_solve(IDAMem IDA_mem,
     ^

Rename all DOFUtilities functions to reflect the deal.II version.

DOFUtilities at the moment uses a naming convention which is not consistent with deal.II. We should rename all the inconsistent functions to reflect deal.II ones. The same applies for FEValuesCache.

Warnings

/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc: In instantiation of ‘void deal2lkit::{anonymous}::default_create_grid(dealii::Triangulation<dim, spacedim>&, std::string, dealii::Point<spacedim>, dealii::Point<spacedim>, double, double, double, bool, unsigned int, unsigned int, std::vector<unsigned int>, std::string) [with int dim = 3; int spacedim = 3; std::string = std::basic_string<char>]’:
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:538:60:   required from ‘void deal2lkit::{anonymous}::create_grid(dealii::Triangulation<dim, dim>&, std::string, dealii::Point<dim>, dealii::Point<dim>, double, double, double, bool, unsigned int, unsigned int, std::vector<unsigned int>, std::string) [with int dim = 3; std::string = std::basic_string<char>]’
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:580:45:   required from here
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_two’ [-Wunused-parameter]
   default_create_grid( Triangulation<dim,spacedim> &tria,
   ^
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_one’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_three’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘un_int_option_one’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘un_int_option_two’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc: In instantiation of ‘void deal2lkit::{anonymous}::default_create_grid(dealii::Triangulation<dim, spacedim>&, std::string, dealii::Point<spacedim>, dealii::Point<spacedim>, double, double, double, bool, unsigned int, unsigned int, std::vector<unsigned int>, std::string) [with int dim = 2; int spacedim = 3; std::string = std::basic_string<char>]’:
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:413:62:   required from ‘void deal2lkit::{anonymous}::create_grid(dealii::Triangulation<dim, (dim + 1)>&, std::string, dealii::Point<(dim + 1)>, dealii::Point<(dim + 1)>, double, double, double, bool, unsigned int, unsigned int, std::vector<unsigned int>, std::string) [with int dim = 2; std::string = std::basic_string<char>]’
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:619:43:   required from here
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_two’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_one’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_three’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘un_int_option_one’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘un_int_option_two’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc: In instantiation of ‘void deal2lkit::{anonymous}::default_create_grid(dealii::Triangulation<dim, spacedim>&, std::string, dealii::Point<spacedim>, dealii::Point<spacedim>, double, double, double, bool, unsigned int, unsigned int, std::vector<unsigned int>, std::string) [with int dim = 1; int spacedim = 1; std::string = std::basic_string<char>]’:
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:538:60:   required from ‘void deal2lkit::{anonymous}::create_grid(dealii::Triangulation<dim, dim>&, std::string, dealii::Point<dim>, dealii::Point<dim>, double, double, double, bool, unsigned int, unsigned int, std::vector<unsigned int>, std::string) [with int dim = 1; std::string = std::basic_string<char>]’
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:645:36:   required from ‘void deal2lkit::ParsedGridGenerator<dim, spacedim>::create(dealii::Triangulation<dim, spacedim>&) [with int dim = 1; int spacedim = 1]’
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:732:27:   required from here
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_two’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_one’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_three’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘un_int_option_one’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘un_int_option_two’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc: In instantiation of ‘void deal2lkit::{anonymous}::default_create_grid(dealii::Triangulation<dim, spacedim>&, std::string, dealii::Point<spacedim>, dealii::Point<spacedim>, double, double, double, bool, unsigned int, unsigned int, std::vector<unsigned int>, std::string) [with int dim = 1; int spacedim = 2; std::string = std::basic_string<char>]’:
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:413:62:   required from ‘void deal2lkit::{anonymous}::create_grid(dealii::Triangulation<dim, (dim + 1)>&, std::string, dealii::Point<(dim + 1)>, dealii::Point<(dim + 1)>, double, double, double, bool, unsigned int, unsigned int, std::vector<unsigned int>, std::string) [with int dim = 1; std::string = std::basic_string<char>]’
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:645:36:   required from ‘void deal2lkit::ParsedGridGenerator<dim, spacedim>::create(dealii::Triangulation<dim, spacedim>&) [with int dim = 1; int spacedim = 2]’
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:733:27:   required from here
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_two’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_one’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_three’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘un_int_option_one’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘un_int_option_two’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc: In instantiation of ‘void deal2lkit::{anonymous}::default_create_grid(dealii::Triangulation<dim, spacedim>&, std::string, dealii::Point<spacedim>, dealii::Point<spacedim>, double, double, double, bool, unsigned int, unsigned int, std::vector<unsigned int>, std::string) [with int dim = 2; int spacedim = 2; std::string = std::basic_string<char>]’:
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:538:60:   required from ‘void deal2lkit::{anonymous}::create_grid(dealii::Triangulation<dim, dim>&, std::string, dealii::Point<dim>, dealii::Point<dim>, double, double, double, bool, unsigned int, unsigned int, std::vector<unsigned int>, std::string) [with int dim = 2; std::string = std::basic_string<char>]’
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:645:36:   required from ‘void deal2lkit::ParsedGridGenerator<dim, spacedim>::create(dealii::Triangulation<dim, spacedim>&) [with int dim = 2; int spacedim = 2]’
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:734:27:   required from here
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_two’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_one’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_three’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘un_int_option_one’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘un_int_option_two’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc: In instantiation of ‘void deal2lkit::{anonymous}::default_create_grid(dealii::Triangulation<dim, spacedim>&, std::string, dealii::Point<spacedim>, dealii::Point<spacedim>, double, double, double, bool, unsigned int, unsigned int, std::vector<unsigned int>, std::string) [with int dim = 3; int spacedim = 3; std::string = std::basic_string<char>]’:
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:538:60:   required from ‘void deal2lkit::{anonymous}::create_grid(dealii::Triangulation<dim, dim>&, std::string, dealii::Point<dim>, dealii::Point<dim>, double, double, double, bool, unsigned int, unsigned int, std::vector<unsigned int>, std::string) [with int dim = 3; std::string = std::basic_string<char>]’
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:580:45:   required from here
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_two’ [-Wunused-parameter]
   default_create_grid( Triangulation<dim,spacedim> &tria,
   ^
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_one’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_three’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘un_int_option_one’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘un_int_option_two’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc: In instantiation of ‘void deal2lkit::{anonymous}::default_create_grid(dealii::Triangulation<dim, spacedim>&, std::string, dealii::Point<spacedim>, dealii::Point<spacedim>, double, double, double, bool, unsigned int, unsigned int, std::vector<unsigned int>, std::string) [with int dim = 2; int spacedim = 3; std::string = std::basic_string<char>]’:
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:413:62:   required from ‘void deal2lkit::{anonymous}::create_grid(dealii::Triangulation<dim, (dim + 1)>&, std::string, dealii::Point<(dim + 1)>, dealii::Point<(dim + 1)>, double, double, double, bool, unsigned int, unsigned int, std::vector<unsigned int>, std::string) [with int dim = 2; std::string = std::basic_string<char>]’
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:619:43:   required from here
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_two’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_one’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_three’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘un_int_option_one’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘un_int_option_two’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc: In instantiation of ‘void deal2lkit::{anonymous}::default_create_grid(dealii::Triangulation<dim, spacedim>&, std::string, dealii::Point<spacedim>, dealii::Point<spacedim>, double, double, double, bool, unsigned int, unsigned int, std::vector<unsigned int>, std::string) [with int dim = 1; int spacedim = 1; std::string = std::basic_string<char>]’:
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:538:60:   required from ‘void deal2lkit::{anonymous}::create_grid(dealii::Triangulation<dim, dim>&, std::string, dealii::Point<dim>, dealii::Point<dim>, double, double, double, bool, unsigned int, unsigned int, std::vector<unsigned int>, std::string) [with int dim = 1; std::string = std::basic_string<char>]’
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:645:36:   required from ‘void deal2lkit::ParsedGridGenerator<dim, spacedim>::create(dealii::Triangulation<dim, spacedim>&) [with int dim = 1; int spacedim = 1]’
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:732:27:   required from here
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_two’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_one’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_three’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘un_int_option_one’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘un_int_option_two’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc: In instantiation of ‘void deal2lkit::{anonymous}::default_create_grid(dealii::Triangulation<dim, spacedim>&, std::string, dealii::Point<spacedim>, dealii::Point<spacedim>, double, double, double, bool, unsigned int, unsigned int, std::vector<unsigned int>, std::string) [with int dim = 1; int spacedim = 2; std::string = std::basic_string<char>]’:
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:413:62:   required from ‘void deal2lkit::{anonymous}::create_grid(dealii::Triangulation<dim, (dim + 1)>&, std::string, dealii::Point<(dim + 1)>, dealii::Point<(dim + 1)>, double, double, double, bool, unsigned int, unsigned int, std::vector<unsigned int>, std::string) [with int dim = 1; std::string = std::basic_string<char>]’
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:645:36:   required from ‘void deal2lkit::ParsedGridGenerator<dim, spacedim>::create(dealii::Triangulation<dim, spacedim>&) [with int dim = 1; int spacedim = 2]’
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:733:27:   required from here
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_two’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_one’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_three’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘un_int_option_one’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘un_int_option_two’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc: In instantiation of ‘void deal2lkit::{anonymous}::default_create_grid(dealii::Triangulation<dim, spacedim>&, std::string, dealii::Point<spacedim>, dealii::Point<spacedim>, double, double, double, bool, unsigned int, unsigned int, std::vector<unsigned int>, std::string) [with int dim = 2; int spacedim = 2; std::string = std::basic_string<char>]’:
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:538:60:   required from ‘void deal2lkit::{anonymous}::create_grid(dealii::Triangulation<dim, dim>&, std::string, dealii::Point<dim>, dealii::Point<dim>, double, double, double, bool, unsigned int, unsigned int, std::vector<unsigned int>, std::string) [with int dim = 2; std::string = std::basic_string<char>]’
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:645:36:   required from ‘void deal2lkit::ParsedGridGenerator<dim, spacedim>::create(dealii::Triangulation<dim, spacedim>&) [with int dim = 2; int spacedim = 2]’
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:734:27:   required from here
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_two’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_one’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘double_option_three’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘un_int_option_one’ [-Wunused-parameter]
/home/heltai/src/deal2lkit/source/parsed_grid_generator.cc:333:3: warning: unused parameter ‘un_int_option_two’ [-Wunused-parameter]

Change name of "Problem run dir name"

"Problem run dir name"

should have been changed to

"Incremental run prefix" in the latest PR.


... deal2lkit/source/utilities.cc: In function ‘bool
deal2lkit::create_directory(const string&)’:

... deal2lkit/source/utilities.cc:125:27: warning: ignoring return value
of ‘int system(const char*)’, declared with attribute warn_unused_result
[-Wunused-result]

Warnings 2

In file included from /extra/luca/codes/eigen-laplace/include/eigen_problem.h:55:0,
                 from /extra/luca/codes/eigen-laplace/source/eigen_problem.cc:5:
/extra/luca/inst/deal2lkit-dev/include/deal2lkit/fe_values_cache.h:119:4: warning: extra ‘;’ [-Wpedantic]
   };

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