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Matthew Wells's Projects

strobealign icon strobealign

Aligns short reads using dynamic seed size with strobemers

syncmer icon syncmer

Validation of sycnmers compared to minimizers

t1ha icon t1ha

Fast Positive Hash, aka "Позитивный Хэш" - just the fastest portable hash function.

treemmer icon treemmer

Python tool to reduce size and redundancy of phylogenetic datasets

variantstore icon variantstore

VariantStore: A Large-Scale Genomic Variant Search Index

vcfparser icon vcfparser

Parse iVar output into beautiful heatmaps based on pre-defined list of SNVs associated with COVID-19 VOC/VOIs

vcfviz icon vcfviz

A quick way to visualize VCF data in a html report

viralmsa icon viralmsa

Reference-guided multiple sequence alignment of viral genomes

viralrecon icon viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

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