Matthew Bernstein's Projects
Analysis for the autoPLIER project
Helpful Python scripts for research in bioinformatics
A simulator for predator/prey interaction and biological evolution.
Refactoring of code used to develop CellO
Tools for managing HTCondor jobs with Python
A Clustergrammer component for Dash
Development of SCA
CS706 Final project
A Python wrapper around GOSeq
Simple graph operations in Python
A Python wrapper around the GSVA algorithm
Find structured-datasets from within the Sequence Read Archive
A Java library of machine learning algorithms.
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Finding common motifs in DNA sequences
Python functions for various normalization procedures for UMI counts data
Tools for loading and manipulating ontologies in Python
My Ph.D. thesis
Python interface to Graphviz graph drawing package
Plots the calibration of a machine learning classifier