mdhewei / bioinforbricklayer Goto Github PK

This directory contains all the learning materials, papers, files, slides and codes for the videos at my Youtube channels: Bioinforbricklayer and 生信进阶之路, as well as Bilibili channel bioinforbricker. See brief introduciton of the content and the aim of the channel here. The channel covers the following topics and subtopics, aimed at taking you from beginner to expert in bioinformatics field.

This section includes tutorials on the following subtopics:

Share all the skills and experiences I gained in my 10+ years career in bioinformatics field, helping you quickly get ready for hands-on tasks in bioinformatic analysis and research. If you find the videos useful,please consifer subscribing my English and/or Chinese channels for more updates to come...

• Skills_01: How to work on Linux system with zero knowledge
• 技能篇01:如何零基础玩转Linux操作系统
• Skills_02: How to convert among different gene IDs
• 技能篇02:如何快速批量转换不同基因编号
• Skills_03: How to publish and manage your github repository
• 技能篇03:如何发表和管理你的GitHub项目库
• Skills_04: How to plot beautiful protein/DNA sequence logos
• 技能篇04:如何画出漂亮的蛋白质/DNA序列特征图
• Skills_05: How to play with protein 3D structure in Jupyter notebook
• 技能篇05: 如何在 jupyter notebook 中实现蛋白质三维结构的可视化
• Skills_06: How to perform gene set enrichment analysis with python
• 技能篇06: 如何用 python 进行基因集富集分析
• Skills_07: How to plot volcano plot and perform gene ontology analysis with python
• 技能篇07: 如何用 python 画火山图和进行基因本体论分析

Explore popular bioinformatics tools widely used for experimental design and data analysis for CRISPR screens, RNAseq, ChIPseq, Perturbseq, etc. If you are also interested, please consider subscribing my English and/or Chinese channels for more updates to come...

• Tools_01: How to design best sgRNA for protein knockout
• 工具篇01: 如何快速设计用于基因/蛋白敲除的最优sgRNA
• Tools_02: How to use ChatGPT for our study and research
• 工具篇02: 如何使用 ChatGPT 来助力生信分析和科学研究
• Tools_03: How to analyze CRISPR high-throughput screen data (part1)
• 工具篇03: 如何分析 CRISPR 高通量筛选数据（上）
• Tools_04: How to analyze CRISPR high-throughput screen data (part2)
• 工具篇04: 如何分析 CRISPR 高通量筛选数据（下）
• Tools_05: How to analyze tiling-sgRNA CRISPR screen data
• 工具篇05: 如何分析基于平铺式 sgRNA 设计的CRISPR 高通量筛选数据

Discover online resources for bioinformatics research, including databases, web servers, and educational materials. Please consider subscribing my English and/or Chinese channels for more updates to come...

This section will feature slides summarizing important scientific papers in the field of bioinformatics on a biweekly basis. If you are interested, please consider subscribing my English and/or Chinese channels for more updates to come...

• EP01: Amazing tool for scientific paper reading
• 第一集：文献阅读神器助力你的科研
• EP02: ProGen: An AI-driven model for large-scale protein design
• 第二集：人工智能 ProGen 助力特定功能蛋白质设计

Learn about my experiences in scientific research, including manuscripts writings,project management and other skills.Please subscribe both my English and Chinese channels for more updates to come...