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Hi there 👋

I am a Senior Researcher and Lecturer of bioinformatics and computer architecture at SAFARI Research Group, D-ITET, ETH Zürich and a former memeber of D-INFK.

My main research is in bioinformatics, computational genomics, metagenomics, and computer architecture. I am especially excited about building new data structures, algorithms, and architectures that make intelligent computation on population-scale sequencing data a reality. I am also excited about system design, using existing and unconventional (e.g., non-von Neumann) computing paradigms, for bioinformatics and big-data applications. I closely advise and mentor several graduate and undergraduate students (>26 overall) at ETH Zürich, CMU, and Bilkent University. Work with us!

Mohammed Alser's Projects

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Shouji: a fast and efficient pre-alignment filter for sequence alignment

sneakysnake icon sneakysnake

The first and the only work that introduces three new efficient pre-alignment filters (SneakySnake, Snake-on-Chip, and Snake-on-GPU) that work efficiently and fast on CPU, GPU, and FPGA architectures and that greatly (by more than two orders of magnitude) expedite sequence alignment. This work is led by Alser et al. (2019).

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Structural variation caller using third generation sequencing

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