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MetaR takes advantage of Language Workbench Technology to facilitate data analysis with the R language.

License: Other

Shell 0.22% Dockerfile 0.21% R 1.17% Java 98.40%

mps data-analysis data-visualization dsl language-workbench analysis-methods r

metar's Introduction

MetaR takes advantage of Language Workbench Technology to facilitate data analysis with the R language. It can be used by:

biologists with limited computational experience. No programming skills are required to start analyzing data.
bioinformaticians who need to perform repetitive analyses and find it beneficial to design and use specialized analyses micro-languages to increase productivity and consistency of data analysis.
bioinformaticians who wish to package state of the art analysis methods into user friendly metaR analysis language constructs. MetaR can act as a bridge between analysis experts who develop analysis methods in R and wish to distribute these methods to the broadest audience without investing a lot of effort in developing user interfaces.

MetaR is designed to work well with other languages of the platform. Importantly, users who learn how to use one component will acquire skills useful with other languages offered on the platform.

Documentation of MetaR is available on github.io.

metar's People

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metar's Issues

Support Docker in Windows.

Because of some issues with paths, Docker executions are not currently working when running on the Windows platform.

Use BiocManager to install bioconductor packages.

For example:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("edgeR")

Error while enabling checkpoints in the Docker container.

Loading required package: checkpoint

checkpoint: Part of the Reproducible R Toolkit from Microsoft
https://mran.microsoft.com/documents/rro/reproducibility/
Error in authorizeFileSystemUse(checkpointLocation) : 
  The .checkpoint folder does not exist. Please try again after creating the folder at /root/.checkpoint
Calls: checkpoint -> authorizeFileSystemUse
Execution halted

Executions fail if spaces are used in the analysis name and path

If a space is used in the analysis name or path, the execution of the analysis fails. Also the results directory should support spaces as well.

Future tables not refreshed

Join and Transform table statements do no properly refresh the output table. It requires some time and actions in the editor before the future table's columns are available.

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