mica-mni / z-brains Goto Github PK

Should we map the surfaces to sample features in each modality's native space?

already do N4BiasFieldCorrection - anything else?

Search across available sessions for each healthy control to get as many data modalities as we can for analysis

1. for the reports generation, is there any way for us to change the code so that if we're running zbrains on only one structure, it will only output that structure? Currently, if I run zbrains on --struct cortex the report generation will be stopped with an error (I think it's because it's expecting all structures for the report generation).
2. For features, I think it would be nice if the reports could also be generated with only the features stated in --feat , because currently even if I run analysis for --feat thickness the reports still automatically output every feature available from previously generated analyses

• Map univariate features to volume space: regional and asymmetry
• Map multivariate map to volume: regional

Reuse those generated by micapipe rather than repeating bbregister in proc_qt1 script

Thickness: no smooth -> 2mm
FLAIR, DWI, qT1: 10mm -> 2mm?

Import morphology from micapipe and add smoothing (2mm) of hippocampus

hyperintensity on medial wall giving zscore of ~19