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dpcr_data's Introduction

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Additional data sets for the analysis, visualisation and simulation of digital PCR experiments.

<img src="dpcReport_data_logo.png" alt="Logo" width: "100"/>

Usage of the data sets

Download

The data can be downloaded here on github as a zip-file, so that the download is as open and simple as possible. However, this data repository can be used as any github repository.

Download and read into R

All data sets can be downloaded using the following code:

download.file(url = "https://github.com/michbur/dpcReport_data/archive/master.zip", 
              destfile = "dpcReport_data.zip")
unzip("dpcReport_data.zip", exdir = getwd())
file.remove("dpcReport_data.zip")
# read a chosen file using dpcR package
library(dpcR)
read_dpcr(input = "dpcR_data-master/QX200.csv", format = "QX200")

Software package for the data analysis

The data can be used from the web server dpcReport GUI or from the command line via the dpcR R package.

Sources of the data

The data were provided by researchers from independent projects. The following table gives some details on the contributors. If you wish to add a data set please contact us on github.

Contributor Data set Citation
Alexandra Whale BioMark_detailed.csv TBD
Alexandra Whale BioMark_summary.xlsx TBD
QX100.xslx TBD
Michael Jahn QX100_rawdata.zip TBD
Max Kuhn QX200.csv TBD
Michał Burdukiewicz redf.csv TBD

About

This data repository is a part of pcRuniveRsum.

dpcr_data's People

Contributors

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Watchers

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Forkers

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