Comments (4)
Yes - I'll close it here. The pull request checks have almost finished, and @lohedges has reviewed the change. The CI/CD should finish building an updated dev Conda package by likely 6-7pm.
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Thanks for finding this - it is definitely a sire bug. I've either forgotten to add the registrar for the metatype for the class, or there is some shared library weirdness that is meaning that the metatype is not being found on load. I'll take a look and debug :-)
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Yes - I'd forgotten to register the meta types for a number of AtomProperty classes that are used to store atom properties loaded from SDF files. Your fix of going to/from a prm7/rst7
file worked because it removed those properties from the molecule.
I have raised this pull request in openbiosim/sire
that will fix the issue. It will be in the dev
package of openbiosim/sire
later today (once the CI has run) and then in the main release once we have enough bugfixes or new features to justify a release.
from biosimspace.
Great, many thanks @chryswoods. I guess we can close this issue here then?
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Related Issues (20)
- CI hangs / timeouts HOT 1
- 'BioSimSpace._SireWrappers.System' can only contain unique molecules. HOT 8
- BioSimSpace.IO.readMolecules failed to read amber prm7 and rst7 file HOT 2
- Paramaterising with openff issues HOT 13
- UnboundLocalError when loading Chamber topology file. HOT 2
- Inconsistent Reporting of Dihedral Energies HOT 5
- Correction for funnel metadynamics HOT 3
- Strategy for migration to OpenBioSim GitHub organisation HOT 1
- Storage quota exceeded on the Anaconda cloud HOT 1
- HILLS file not updating during restarting simulation HOT 4
- Is it possible to add ions to an already solvated system, without adding any more water molecules? HOT 4
- Problem when converting Gro/Top to Rst7 HOT 12
- Making HMR work with dummies HOT 11
- Make _removeDummies() recognise dummy bonds HOT 10
- Would it be possible to include HiMap as an alternative to LoMap in the generateNetwork method? HOT 2
- Unable to import BioSimSpace after mamba installation HOT 12
- BioSimSpace.Align.viewMapping: py3Dmol.view not rendering in Jupyter Notebook HOT 11
- `_toRegularMolecule` failing with `convert_amber_dummies=True` HOT 15
- Absolute Binding Free Energy Calculations with GROMACS HOT 7
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