User pages don't appear to be working. The _users directory currently resides in the main repo, tried moving it under -pages without any luck.

This include will be useful to have in the future. Allows to import code chunks from github.

Add twitter feed to increase "live-site" feel.

@manager_micro

This should go somewhere on the front page as well as possible the news page.

Currently, the site uses css to create code sections. These can be replaced with an include that utilizes "```" markdown styling.

This can be copied from imageJ, original commit, then fixes for chrome

Internal links to #Heading_Title need to be converted to #heading-title.
(We can do this automatically.)

And above the Get Started button.

"Optical microscope control and image acquisition"?

Port over search function from imagej once complete.

Fix hamburger menu on home.html and page.html. This fix should be able to be copied from `imagej.github.io once the issue is resolved there.

imagej/imagej.github.io#48

convert.sh does not successfully replace pages in fixed-pages, see: Screencasts.md

Need to make font sizes relative, ie percents/em/rems.

Curtis is working on a solution on the ImageJ site that should be able to be ported over

FlickrShow.md AdobeFlash format no longer supported.

Flash video inserted via FlickrShow include.

Tried to download, view, make a screencast but no luck viewing with adobe acrobat.

Other flash uses search: include \#widget:Iframe

The number of MM utilities has grown, but their documentation on the website (https://micro-manager.org/wiki/Utilities) has fallen behind. It would be great to describe the function of the new utilities in detail and provide example use cases.

Currently, the footer on index.md will rest further up the page than intended. Currently, several divs with large vh values are pushing it further down the page, but some clashing still exists at certain page sizes.

editing/keys.md needs to be added back into the editing documentation. Current version has a symlink issue that likely just needs a close read to ID.

I've been trying to reconcile this page for a little bit and am getting nowhere. It seems to be picking up some styling from includes.css.

_talk and _users were moved under _pages, renamed talk and users

Need to check if any links were broken in this process.

Needs user instructions for how to title/filename news blog posts, as well as where to put said files.

There are files from the imagej transfer that are not used on the micromanger site, check categories, layouts, assests, etc folders

ImageJ's guide is okay, will need to swap out info for uManager specific links, info, etc
Add "How do I edit this page?" link to page-info include

• Plugins
• More Help Topics
• FAQ

Happy to do this, but I do not know how to edit those side bars, and how to create new pages.

See 0a5896d, which replaced :File:media/ with media/.
Should we revet that change and instead link to the .md files that are currently in _files/ (after moving the latter to, say, _pages/file_info)?

Use video include instead. approx 15-20 video links to switch over.

Sidebars have been combined into the main-menu include. The sidebars listed below can be removed from all pages:

{% include 2.0_Sidebar %}
{% include Credits_Sidebar %}
{% include Devices_Sidebar %}
{% include Documentation_Sidebar %}
{% include Downloads_Sidebar %}
{% include Events_Sidebar %}
{% include Examples_Sidebar %}
{% include Main_Page_Sidebar %}
{% include Overview_Sidebar %}
{% include Programming_Sidebar %}
{% include Support_Sidebar %}

Some media files appear to be missing:

[2021-06-01 13:48:43] ERROR /media/MM_snap-live.png' not found. [2021-06-01 13:48:43] ERROR /media/Tile_creator2.png' not found.
/media/Asi_gamepad_button_table.jpg

Implement the horizontal navbar for the editing section of the site.

This will have to wait till the imageJ commit is rolled back, then can copy.

Polish up the front page -- new call to action, better spacing between sections.

These are pages imported from the MediaWiki File: URLs, and typically contain a description for the file and image.

• Any of these pages that contain a long description should probably have its content moved to an appropriate ordinary page.
• Image pages with short descriptions should be removed, but the description should generally be moved to the alt of where the image is used.
• Non-image file pages whose description has something to add should have its content edited into the page linking to the file. Those that only have a trivial sentence can just be deleted, if not linked from anywhere.

Links will need to be updated.

See imageJ news page for example code.

Would be good to limit use of plugins due to upkeep/security concerns.

top-bar, user-resources, dev-resources.
possibly the flavicons used in the intro

Programming --> Source code repo history and tickets
https://valelab4.ucsf.edu/trac/micromanager/timeline

Version 2.0 --> Javadoc
https://valelab4.ucsf.edu/~MM/doc-2.0.0-gamma/mmstudio/

Reorganize the main-menu include. Currently too many top-level links, could be optimized.

Currently just converted many <li>'s to html to retire the menu-item include. This resulted in the main menu appearing twice on each page.

It appears that some of them render correctly after correcting the html tags (esp. removing width attributes and adding missing closing tags); others (e.g. LeicaDMI) are still broken after that.

When we point our domain (micro-manager.org) to GitHub pages, we cannot point it to https://micro-manager.github.io/micro-manager.org/*; the custom domain replaces micro-manager.github.io, so with the current repo name we would end up with https://micro-manager.org/micro-manager.org/*, which we certainly don't want.

To serve from the root path under the domain name, the repo needs to be named micro-manager.github.io.

Incidentally, renaming the repo will also fix the problem where the content currently served at https://micro-manager.github.io/micro-manager.org/ doesn't render correctly (because that problem is caused by relative URLs with an absolute path like /media/foo pointing outside of the micro-manager.org directory).

When clicking a link on the main-menu include you are taken to a page, but that page's details section in the menu is not opened and the page is not highlighted. I think the menu-section include is supposed to take care of this, but doesn't seem to be functional at the moment.

Include twitter, exclusive news menu?

index.md and home.html need the following fixes:

1. adjust color theme to match https://micro-manager.org/
2. Add twitter feed
3. Replace and imagej links with MM links
4. Add info section about MM