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mnglims-cli's Introduction

Installation / Requirements

  • python3, with dependencies listed in requirements.txt
  • Add your API key to settings.py

Commands

getplatemeta [-h] ref

  • ref: (str) The plate reference for which you want meta-data

getqueues

  • No arguments

setsamplequeue [-h] queue-id ref [ref ...]

  • queue-id: (int) The id of the destination queue
  • ref: (str) The sample reference(s) you wish to queue

setprojectresultspath [-h] ref path

  • ref: (str) The project reference
  • path: (str) The results data path (unique part)

updatesamples [-h] [-c] ref [ref ...]

  • ref (str) The sample reference(s) you wish to update
  • -c, --suspected-contamination (bool) Suspected sample contamination

Note: when updating boolean values you must specify both the option and the value: e.g., -c False

mnglims-cli's People

Contributors

aresti avatar schnucks avatar

Watchers

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