mikejhuang / lungnoduledetectionclassification Goto Github PK

Hi
how can i download the DSB2017 dataset?(It has been removed from kaggle site)

@mikejhuang 您好！想请问一下，为什么modelweights文件夹是空的？

Hi, mike huang
How to cite your work? Which paper should be cite?
Thank you very much!
Best regards
Gu Yu

LIDC file folder
https://github.com/cpuxzb/Question/blob/master/folder.png
When I run the '1. Process Nodule Dataset.ipynb',following code block generates a null datfolder variable.
https://github.com/cpuxzb/Question/blob/master/error%20code.JPG

i want to learn more about your project，thx

I have done segmentation training with lung images and mask nodules using 2trainUnet.ipynb. But when check with test images, It just segments the lung portion, not the nodule. Did you got the nodule segmentation with the TrainUnet??

When I run ProcessNoduleDataset.ipynb, I find 'segment_lung_mask' is not defined. And I can't find the definition in the code. Would you please help me solve this problem?

Could you provide the model weights via dropbox or google drive please?

I don't understand the 'DOI' folder and the content of 'DOI' ...
Please help me!!

I'm sorry to bother you again. When you add the 'segment_lung_mask', there is a new problem. 'largest_label_volume' used in 'segment_lung_mask' function is not defined.

Hi! When I try to run your ProcessNoduleDataset, I don't know what should be set as the value of DOIfolderpath. Is it the path towards the LIDC imaging data?

#File paths
metadatapath="D:/LIDC Dataset/LIDC-IDRI_MetaData.csv"
list32path="D:/LIDC Dataset/list3.2.csv"
DOIfolderpath='D:/LIDC Dataset/LIDC-IDRI/'
datafolder='D:/LIDC Dataset/datafolder/'

########################################
#Load metadata
meta=pd.read_csv(metadatapath)
meta=meta.drop(meta[meta['Modality']!='CT'].index)
meta=meta.reset_index()

#Get folder names of CT data for each patient
patients=[DOIfolderpath+meta['Patient Id'][i] for i in range(len(meta))]
datfolder=[]
for i in range(0,len(meta)-1):
for path in os.listdir(patients[i]):
if os.path.exists(patients[i]+'/'+path+'/'+meta['Series UID'][i]):
datfolder.append(patients[i]+'/'+path+'/'+meta['Series UID'][i])
patients=datfolder

Respected Madam,
In my System images path: D:/LIDC Dataset/LIDC-IDRI/LIDC-IDRI-0001/01-01-2000-30178/3000566.000000-03192/
based on this above code is not appending any data to patients and it is showing IndexError: list index out of range.

So, please provide the solution of my code , your support is going to help a lot for my research work.

Thanks in the advance