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casperdcl avatar kylemcdonald avatar martinthoma avatar mikesj-public avatar swarbrickjones avatar sym44 avatar

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convolutional_autoencoder's Issues

Where is the counting part

Hi, sry for the dump question but on your blog you are talking about counting blobs. Which part of your code is doing that?
Greetings

Theano version in requirements.txt too old.

Installing requirements as follows:

git clone https://github.com/mikesj-public/convolutional_autoencoder/
cd convolutional_autoencoder
conda env create convae anaconda
# say yes to prompt
source activate convae
cp requirements.txt all_requirements.txt
# REMOVE NOLEARN, MATPLOTLIB, AND LASAGNE FROM requirements.txt
pip install -r requirements.txt
pip install matplotlib
pip install --upgrade https://github.com/Lasagne/Lasagne/archive/master.zip
pip install --upgrade git+https://github.com/dnouri/nolearn.git@master#egg=nolearn==0.6a0.dev0

I assume this installs versions as they are stated in requirements.txt. Unfortunately this leads to the following error on import i.e. executing cell 3 of the ipynb.

---------------------------------------------------------------------------
ImportError                               Traceback (most recent call last)
<ipython-input-3-8d39d889452d> in <module>()
----> 1 from lasagne.layers import get_output, InputLayer, DenseLayer, Upscale2DLayer, ReshapeLayer
      2 from lasagne.nonlinearities import rectify, leaky_rectify, tanh
      3 from lasagne.updates import nesterov_momentum
      4 from lasagne.objectives import categorical_crossentropy
      5 from nolearn.lasagne import NeuralNet, BatchIterator, PrintLayerInfo

/home/james/anaconda2/envs/convae/lib/python2.7/site-packages/lasagne/__init__.py in <module>()
     17         import theano.tensor.signal.pool
     18     except ImportError:  # pragma: no cover
---> 19         raise ImportError("Your Theano version is too old." + install_instr)
     20     del install_instr
     21     del theano

ImportError: Your Theano version is too old.

Please make sure you install a recent enough version of Theano. Note that a
simple 'pip install theano' will usually give you a version that is too old
for Lasagne. See the installation docs for more details:
http://lasagne.readthedocs.org/en/latest/user/installation.html#theano

Just to confirm that everything is as expected - here is the output of my conda list:

$ conda list
# packages in environment at /home/james/anaconda2/envs/convae:
#
alabaster                 0.7.7                    py27_0  
anaconda                  4.0.0               np110py27_0  
anaconda-client           1.4.0                    py27_0  
anaconda-navigator        1.1.0                    py27_0  
argcomplete               1.0.0                    py27_1  
astropy                   1.1.2               np110py27_0  
babel                     2.2.0                    py27_0  
backports-abc             0.4                       <pip>
backports.ssl-match-hostname 3.4.0.2                   <pip>
backports_abc             0.4                      py27_0  
beautifulsoup4            4.4.1                    py27_0  
bitarray                  0.8.1                    py27_0  
blaze                     0.9.1                    py27_0  
bokeh                     0.11.1                   py27_0  
boto                      2.39.0                   py27_0  
bottleneck                1.0.0               np110py27_0  
cairo                     1.12.18                       6  
cdecimal                  2.3                      py27_0  
cffi                      1.5.2                    py27_0  
chest                     0.2.3                    py27_0  
cloudpickle               0.1.1                    py27_0  
clyent                    1.2.1                    py27_0  
colorama                  0.3.7                    py27_0  
conda-manager             0.3.1                    py27_0  
configobj                 5.0.6                    py27_0  
cryptography              1.3                      py27_0  
curl                      7.45.0                        0  
cycler                    0.10.0                   py27_0  
cython                    0.23.4                   py27_0  
cytoolz                   0.7.5                    py27_0  
dask                      0.8.1                    py27_0  
datashape                 0.5.1                    py27_0  
decorator                 4.0.9                    py27_0  
dill                      0.2.4                    py27_0  
docutils                  0.12                     py27_0  
dynd                      0.7.3.dev1                <pip>
dynd-python               0.7.2                    py27_0  
enum34                    1.1.2                    py27_0  
et-xmlfile                1.0.1                     <pip>
et_xmlfile                1.0.1                    py27_0  
fastcache                 1.0.2                    py27_0  
flask                     0.10.1                   py27_1  
flask-cors                2.1.2                    py27_0  
fontconfig                2.11.1                        5  
freetype                  2.5.5                         0  
funcsigs                  0.4                      py27_0  
futures                   3.0.3                    py27_0  
gdbn                      0.1                       <pip>
gevent                    1.1.0                    py27_0  
gnumpy                    0.2                       <pip>
greenlet                  0.4.9                    py27_0  
grin                      1.2.1                    py27_1  
h5py                      2.5.0               np110py27_4  
hdf5                      1.8.15.1                      2  
heapdict                  1.0.0                    py27_0  
idna                      2.0                      py27_0  
ipaddress                 1.0.14                   py27_0  
ipykernel                 4.3.1                    py27_0  
ipython                   4.1.2                    py27_1  
ipython-genutils          0.1.0                     <pip>
ipython_genutils          0.1.0                    py27_0  
ipywidgets                4.1.1                    py27_0  
itsdangerous              0.24                     py27_0  
jbig                      2.1                           0  
jdcal                     1.2                      py27_0  
jedi                      0.9.0                    py27_0  
jinja2                    2.8                      py27_0  
joblib                    0.9.4                     <pip>
jpeg                      8d                            0  
jsonschema                2.4.0                    py27_0  
jupyter                   1.0.0                    py27_2  
jupyter-client            4.2.2                     <pip>
jupyter-console           4.1.1                     <pip>
jupyter-core              4.1.0                     <pip>
jupyter_client            4.2.2                    py27_0  
jupyter_console           4.1.1                    py27_0  
jupyter_core              4.1.0                    py27_0  
lasagne                   0.2.dev1                  <pip>
libdynd                   0.7.2                         0  
libffi                    3.0.13                        0  
libgfortran               3.0                           0  
libpng                    1.6.17                        0  
libsodium                 1.0.3                         0  
libtiff                   4.0.6                         1  
libxml2                   2.9.2                         0  
libxslt                   1.1.28                        0  
llvmlite                  0.9.0                    py27_0  
locket                    0.2.0                    py27_0  
lxml                      3.6.0                    py27_0  
markupsafe                0.23                     py27_0  
matplotlib                1.5.1               np110py27_0  
mistune                   0.7.2                    py27_0  
mkl                       11.3.1                        0  
mkl-service               1.1.2                    py27_0  
mock                      1.3.0                     <pip>
mpmath                    0.19                     py27_0  
multipledispatch          0.4.8                    py27_0  
nbconvert                 4.1.0                    py27_0  
nbformat                  4.0.1                    py27_0  
networkx                  1.11                     py27_0  
nltk                      3.2                      py27_0  
nolearn                   0.6a0.dev0                <pip>
nose                      1.3.7                    py27_0  
notebook                  4.1.0                    py27_1  
numba                     0.24.0              np110py27_0  
numexpr                   2.5                 np110py27_0  
numpy                     1.10.4                   py27_1  
odo                       0.4.2                    py27_0  
openpyxl                  2.3.2                    py27_0  
openssl                   1.0.2g                        0  
pandas                    0.18.0              np110py27_0  
partd                     0.3.2                    py27_1  
patchelf                  0.8                           0  
path.py                   8.1.2                    py27_1  
patsy                     0.4.0               np110py27_0  
pbr                       1.8.0                     <pip>
pep8                      1.7.0                    py27_0  
pexpect                   4.0.1                    py27_0  
pickleshare               0.5                      py27_0  
pillow                    3.1.1                    py27_0  
pip                       8.1.1                    py27_1  
pixman                    0.32.6                        0  
ply                       3.8                      py27_0  
psutil                    4.1.0                    py27_0  
ptyprocess                0.5                      py27_0  
py                        1.4.31                   py27_0  
pyasn1                    0.1.9                    py27_0  
pycairo                   1.10.0                   py27_0  
pycosat                   0.6.1                    py27_0  
pycparser                 2.14                     py27_0  
pycrypto                  2.6.1                    py27_0  
pycurl                    7.19.5.3                 py27_0  
pyflakes                  1.1.0                    py27_0  
pygments                  2.1.1                    py27_0  
pyopenssl                 0.15.1                   py27_2  
pyparsing                 2.0.3                    py27_0  
pyqt                      4.11.4                   py27_1  
pytables                  3.2.2               np110py27_1  
pytest                    2.8.5                    py27_0  
python                    2.7.11                        0  
python-dateutil           2.5.1                    py27_0  
pytz                      2016.2                   py27_0  
pyyaml                    3.11                     py27_1  
pyzmq                     15.2.0                   py27_0  
qt                        4.8.7                         1  
qtawesome                 0.3.2                    py27_0  
qtconsole                 4.2.0                    py27_0  
qtpy                      1.0                      py27_0  
readline                  6.2                           2  
redis                     2.6.9                         0  
redis-py                  2.10.3                   py27_0  
requests                  2.9.1                    py27_0  
rope                      0.9.4                    py27_1  
scikit-image              0.12.3              np110py27_0  
scikit-learn              0.17.1              np110py27_0  
scipy                     0.17.0              np110py27_2  
setuptools                20.3                     py27_0  
simplegeneric             0.8.1                    py27_0  
singledispatch            3.4.0.3                  py27_0  
sip                       4.16.9                   py27_0  
six                       1.10.0                   py27_0  
snowballstemmer           1.2.1                    py27_0  
sockjs-tornado            1.0.1                    py27_0  
sphinx                    1.3.5                    py27_0  
sphinx-rtd-theme          0.1.9                     <pip>
sphinx_rtd_theme          0.1.9                    py27_0  
spyder                    2.3.8                    py27_1  
sqlalchemy                1.0.12                   py27_0  
sqlite                    3.9.2                         0  
ssl_match_hostname        3.4.0.2                  py27_0  
statsmodels               0.6.1               np110py27_0  
sympy                     1.0                      py27_0  
tables                    3.2.2                     <pip>
tabulate                  0.7.5                     <pip>
terminado                 0.5                      py27_1  
theano                    0.8.0                     <pip>
tk                        8.5.18                        0  
toolz                     0.7.4                    py27_0  
tornado                   4.3                      py27_0  
traitlets                 4.2.1                    py27_0  
unicodecsv                0.14.1                   py27_0  
util-linux                2.21                          0  
werkzeug                  0.11.4                   py27_0  
wheel                     0.29.0                   py27_0  
xlrd                      0.9.4                    py27_0  
xlsxwriter                0.8.4                    py27_0  
xlwt                      1.0.0                    py27_0  
xz                        5.0.5                         1  
yaml                      0.1.6                         0  
zeromq                    4.1.3                         0  
zlib                      1.2.8                         0  

getting the error message

Hi!
Great post about auto encoder!
I had this issue when trying to run the code in ipython note book:
(BTW, I'm pretty new to python and libraries you used so the error might be a result of fault installation)

c:\anaconda\lib\lasagne-master\lasagne\init.py:86: UserWarning: The uniform initializer no longer uses Glorot et al.'s approach to determine the bounds, but defaults to the range (-0.01, 0.01) instead. Please use the new GlorotUniform initializer to get the old behavior. GlorotUniform is now the default for all layers.
warnings.warn("The uniform initializer no longer uses Glorot et al.'s "


TypeError Traceback (most recent call last)
in ()
39 verbose=1,
40 )
---> 41 ae.fit(X_train, X_out)

C:\Anaconda\lib\site-packages\nolearn\lasagne.pyc in fit(self, X, y)
136 out = getattr(self, '_output_layer', None)
137 if out is None:
--> 138 out = self._output_layer = self.initialize_layers()
139 if self.verbose:
140 self._print_layer_info(self.get_all_layers())

C:\Anaconda\lib\site-packages\nolearn\lasagne.pyc in initialize_layers(self, layers)
367 for (layer_name, layer_factory) in self.layers[1:]:
368 layer_params = self._get_params_for(layer_name)
--> 369 layer = layer_factory(layer, **layer_params)
370
371 self._output_layer = layer

TypeError: init() takes at least 3 arguments (2 given)

fit error

I rewrote the network using the newer specifications of lasagne as follows:

conv_filters = 32
deconv_filters = 32
filter_sizes = 7
epochs = 20
encode_size = 40
l_in = layers.InputLayer((None, 1, 28, 28))
l_conv = layers.Conv2DLayer(l_in, num_filters=conv_filters, filter_size = (filter_sizes, filter_sizes), pad="valid", nonlinearity=None, W=init.GlorotUniform(), b=init.Constant(0.))
l_pool = layers.MaxPool2DLayer(l_conv, pool_size=(2,2))
l_flat  = ReshapeLayer(l_pool,shape=(([0], -1)))
l_en =  layers.DenseLayer(l_flat,num_units=encode_size)
l_hidd = layers.DenseLayer(l_en,num_units=deconv_filters * (28 + filter_sizes - 1) ** 2 / 4, W=init.GlorotUniform(), b=init.Constant(0.))
l_unflat = ReshapeLayer(l_hidd,shape=(([0], deconv_filters, (28 + filter_sizes - 1) / 2, (28 + filter_sizes - 1) / 2 )))
l_unpool = Unpool2DLayer(l_unflat, ds=(2,2))
l_deconv = layers.Conv2DLayer(l_unpool, num_filters=1, filter_size=(filter_sizes, filter_sizes), pad="valid", nonlinearity=None)
l_out   = layers.ReshapeLayer(l_deconv, shape=(([0], -1)))
ae = NeuralNet(layers=[('input', l_in), ('conv', l_conv), ('pool', l_pool), ('flatten', l_flat), 
                       ('encode_layer', l_en), ('hidden', l_hidd), ('unflatten', l_unflat), 
                       ('unpool', l_unpool), ('deconv', l_deconv), ('output_layer',l_out)],update_learning_rate = 0.01,
                       update_momentum = 0.975,  batch_iterator_train=FlipBatchIterator(batch_size=128), regression=True,
                       max_epochs= epochs, verbose=1)

ae.fit(X_train, X_out)

but I got the following error:


---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)
<ipython-input-122-fcd713c0425c> in <module>()
     58 # print prediction
     59 
---> 60 ae.fit(X_train, X_out, epochs=None)
     61 print 'done'
     62 ###  expect training / val error of about 0.087 with these parameters

/home/tarek/Libraries/anaconda/lib/python2.7/site-packages/nolearn/lasagne/base.pyc in fit(self, X, y, epochs)
    443             y = self.enc_.fit_transform(y).astype(np.int32)
    444             self.classes_ = self.enc_.classes_
--> 445         self.initialize()
    446 
    447         try:

/home/tarek/Libraries/anaconda/lib/python2.7/site-packages/nolearn/lasagne/base.pyc in initialize(self)
    284         out = getattr(self, '_output_layer', None)
    285         if out is None:
--> 286             out = self._output_layer = self.initialize_layers()
    287         self._check_for_unused_kwargs()
    288 

/home/tarek/Libraries/anaconda/lib/python2.7/site-packages/nolearn/lasagne/base.pyc in initialize_layers(self, layers)
    359             # assumed to require an 'incoming' paramter.  By default,
    360             # we'll use the previous layer as input:
--> 361             if not issubclass(layer_factory, InputLayer):
    362                 if 'incoming' in layer_kw:
    363                     layer_kw['incoming'] = self.layers_[

TypeError: issubclass() arg 1 must be a class

any ideas?

ValueError: CorrMM received weight with wrong type.

I have got this error

(50000, 28, 28) (50000, 1, 28, 28)

2

Traceback (most recent call last):
File "conv_autoencoder2.py", line 195, in
X_encoded = encode_input(encode_layer, X)
File "conv_autoencoder2.py", line 193, in encode_input
return get_output(encode_layer, inputs=X).eval()
File "/usr/local/lib/python2.7/dist-packages/theano/gof/graph.py", line 523, in eval
rval = self.fn_cacheinputs
File "/usr/local/lib/python2.7/dist-packages/theano/compile/function_module.py", line 871, in _call
storage_map=getattr(self.fn, 'storage_map', None))
File "/usr/local/lib/python2.7/dist-packages/theano/gof/link.py", line 314, in raise_with_op
reraise(exc_type, exc_value, exc_trace)
File "/usr/local/lib/python2.7/dist-packages/theano/compile/function_module.py", line 859, in call
outputs = self.fn()
ValueError: CorrMM received weight with wrong type.
Apply node that caused the error: CorrMM{(0, 0), (1, 1)}(TensorConstant{[[[[ 0. 0..0. 0.]]]]}, Subtensor{::, ::, ::int64, ::int64}.0)
Toposort index: 8
Inputs types: [TensorType(float32, (False, True, False, False)), TensorType(float64, 4D)]
Inputs shapes: [(50000, 1, 28, 28), (16, 1, 3, 3)]
Inputs strides: [(3136, 3136, 112, 4), (72, 72, -24, -8)]
Inputs values: ['not shown', 'not shown']
Outputs clients: [[Elemwise{Composite{(i0 * (Abs((i1 + i2)) + i1 + i2))}}(TensorConstant{(1, 1, 1, 1) of 0.5}, CorrMM{(0, 0), (1, 1)}.0, InplaceDimShuffle{x,0,x,x}.0)]]

HINT: Re-running with most Theano optimization disabled could give you a back-trace of when this node was created. This can be done with by setting the Theano flag 'optimizer=fast_compile'. If that does not work, Theano optimizations can be disabled with 'optimizer=None'.
HINT: Use the Theano flag 'exception_verbosity=high' for a debugprint and storage map footprint of this apply node.
"""

Tied weights?

Does this convolution use tied weights (for the encoder and decoder layers)? If so, is there a way to untie the weights? I'm curious about how to tie and untie the weights of the autoencoder and experiment with both.

Code Generalizations

Hi,

I'm trying to write an interface/wrapper around your example convolutional autoencoder code, so that it's a little easier for someone who may to want to point this to other datasets (folder of images on disk), color images, or change some parameters of the network structure.

In the "Unpool2DLayer" class, I'm noticing that the "get_output_for()" function is using the "get_output_shape_for()" function properly to use "ds" in order to compute the new unpooled shape. However, the returned value seems to used fixed values of "2" rather than "ds"?

Existing code:
def get_output_for(self, input, **kwargs):
ds = self.ds
input_shape = input.shape
output_shape = self.get_output_shape_for(input_shape)
return input.repeat(2, axis=2).repeat(2, axis=3)

Shouldn't that last line be:
return input.repeat(self.ds[0], axis=2).repeat(self.ds[1], axis=3)

Am I correct, or am I not properly understanding the code?

Thanks.

getting the error message

Hi!
Great post about auto encoder!
I had this issue when trying to run the code in ipython note book:
(BTW, I'm pretty new to python and libraries you used so the error might be a result of fault installation)

c:\anaconda\lib\lasagne-master\lasagne\init.py:86: UserWarning: The uniform initializer no longer uses Glorot et al.'s approach to determine the bounds, but defaults to the range (-0.01, 0.01) instead. Please use the new GlorotUniform initializer to get the old behavior. GlorotUniform is now the default for all layers.

warnings.warn("The uniform initializer no longer uses Glorot et al.'s "

TypeError Traceback (most recent call last)
in ()
39 verbose=1,
40 )
---> 41 ae.fit(X_train, X_out)

C:\Anaconda\lib\site-packages\nolearn\lasagne.pyc in fit(self, X, y)
136 out = getattr(self, '_output_layer', None)
137 if out is None:
--> 138 out = self._output_layer = self.initialize_layers()
139 if self.verbose:
140 self._print_layer_info(self.get_all_layers())

C:\Anaconda\lib\site-packages\nolearn\lasagne.pyc in initialize_layers(self, layers)
367 for (layer_name, layer_factory) in self.layers[1:]:
368 layer_params = self._get_params_for(layer_name)
--> 369 layer = layer_factory(layer, **layer_params)
370
371 self._output_layer = layer

TypeError: init() takes at least 3 arguments (2 given)

ValueError: CorrMM received weight with wrong type.

Hi,

I tried your sample with, I think, latest versions of each prerequisites and got the following after fitting network correctly :
"""
(50000, 28, 28) (50000, 1, 28, 28)

2

Traceback (most recent call last):
File "conv_autoencoder2.py", line 195, in
X_encoded = encode_input(encode_layer, X)
File "conv_autoencoder2.py", line 193, in encode_input
return get_output(encode_layer, inputs=X).eval()
File "/usr/local/lib/python2.7/dist-packages/theano/gof/graph.py", line 523, in eval
rval = self._fn_cacheinputs
File "/usr/local/lib/python2.7/dist-packages/theano/compile/function_module.py", line 871, in call
storage_map=getattr(self.fn, 'storage_map', None))
File "/usr/local/lib/python2.7/dist-packages/theano/gof/link.py", line 314, in raise_with_op
reraise(exc_type, exc_value, exc_trace)
File "/usr/local/lib/python2.7/dist-packages/theano/compile/function_module.py", line 859, in call
outputs = self.fn()
ValueError: CorrMM received weight with wrong type.
Apply node that caused the error: CorrMM{(0, 0), (1, 1)}(TensorConstant{[[[[ 0. 0..0. 0.]]]]}, Subtensor{::, ::, ::int64, ::int64}.0)
Toposort index: 8
Inputs types: [TensorType(float32, (False, True, False, False)), TensorType(float64, 4D)]
Inputs shapes: [(50000, 1, 28, 28), (16, 1, 3, 3)]
Inputs strides: [(3136, 3136, 112, 4), (72, 72, -24, -8)]
Inputs values: ['not shown', 'not shown']
Outputs clients: [[Elemwise{Composite{(i0 * (Abs((i1 + i2)) + i1 + i2))}}(TensorConstant{(1, 1, 1, 1) of 0.5}, CorrMM{(0, 0), (1, 1)}.0, InplaceDimShuffle{x,0,x,x}.0)]]

HINT: Re-running with most Theano optimization disabled could give you a back-trace of when this node was created. This can be done with by setting the Theano flag 'optimizer=fast_compile'. If that does not work, Theano optimizations can be disabled with 'optimizer=None'.
HINT: Use the Theano flag 'exception_verbosity=high' for a debugprint and storage map footprint of this apply node.
"""

Did I miss something somewhere ?
Thanks.

TypeError: cost must be a scalar.

Hi,

I'm getting an error: "TypeError: cost must be a scalar." in line 432 of gradient.py in theano.

I'm using Anaconda with Python 2.7, Lasagne 0.1.dev0, scikit-learn 0.15.2, Theano 0.7, "nolearn-0.6a0.dev0".

Can you specify the versions of Theano, Lasagne, and nolearn that work with your code?

Full error results are below:

python mnist_conv_autoencode.py
Using gpu device 0: Tesla K40m
/usr/local/anaconda/lib/python2.7/site-packages/Lasagne-0.1.dev0-py2.7.egg/lasagne/init.py:86: UserWarning: The uniform initializer no longer uses Glorot e.'s approach to determine the bounds, but defaults to the range (-0.01, 0.01) instead. Please use the new GlorotUniform initializer to get the old behaviororotUniform is now the default for all layers.
warnings.warn("The uniform initializer no longer uses Glorot et al.'s "
/usr/local/anaconda/lib/python2.7/site-packages/Lasagne-0.1.dev0-py2.7.egg/lasagne/layers/helper.py:69: UserWarning: get_all_layers() has been changed to rn layers in topological order. The former implementation is still available as get_all_layers_old(), but will be removed before the first release of Lasagno ignore this warning, use warnings.filterwarnings('ignore', '.*topo.*').
warnings.warn("get_all_layers() has been changed to return layers in "
/usr/local/anaconda/lib/python2.7/site-packages/nolearn/lasagne.py:376: UserWarning: layer.get_output_shape() is deprecated and will be removed for the firelease of Lasagne. Please use layer.output_shape instead.
output_shape = layer.get_output_shape()
ReshapeLayer (None, 784) produces 784 outputs
Conv2DLayer (None, 1, 28, 28) produces 784 outputs
Unpool2DLayer (None, 32, 34, 34) produces 36992 outputs
ReshapeLayer (None, 32, 17, 17) produces 9248 outputs
DenseLayer (None, 9248) produces 9248 outputs
DenseLayer (None, 40) produces 40 outputs
ReshapeLayer (None, 3872) produces 3872 outputs
MaxPool2DLayer (None, 32, 11, 11) produces 3872 outputs
Conv2DLayer (None, 32, 22, 22) produces 15488 outputs
InputLayer (None, 1, 28, 28) produces 784 outputs
/usr/local/anaconda/lib/python2.7/site-packages/nolearn/lasagne.py:283: UserWarning: layer.get_output(...) is deprecated and will be removed for the first ase of Lasagne. Please use lasagne.layers.get_output(layer, ...) instead.
output_layer.get_output(X_batch), y_batch)
/usr/local/anaconda/lib/python2.7/site-packages/nolearn/lasagne.py:285: UserWarning: layer.get_output(...) is deprecated and will be removed for the first ase of Lasagne. Please use lasagne.layers.get_output(layer, ...) instead.
output_layer.get_output(X_batch, deterministic=True), y_batch)
/usr/local/anaconda/lib/python2.7/site-packages/nolearn/lasagne.py:286: UserWarning: layer.get_output(...) is deprecated and will be removed for the first ase of Lasagne. Please use lasagne.layers.get_output(layer, ...) instead.
predict_proba = output_layer.get_output(X_batch, deterministic=True)
Traceback (most recent call last):
File "mnist_conv_autoencode.py", line 158, in
ae.fit(X_train, X_out)
File "/usr/local/anaconda/lib/python2.7/site-packages/nolearn/lasagne.py", line 145, in fit
self.y_tensor_type,
File "/usr/local/anaconda/lib/python2.7/site-packages/nolearn/lasagne.py", line 295, in _create_iter_funcs
updates = update(loss_train, all_params, **update_params)
File "/usr/local/anaconda/lib/python2.7/site-packages/Lasagne-0.1.dev0-py2.7.egg/lasagne/updates.py", line 324, in nesterov_momentum
updates = sgd(loss_or_grads, params, learning_rate)
File "/usr/local/anaconda/lib/python2.7/site-packages/Lasagne-0.1.dev0-py2.7.egg/lasagne/updates.py", line 134, in sgd
grads = get_or_compute_grads(loss_or_grads, params)
File "/usr/local/anaconda/lib/python2.7/site-packages/Lasagne-0.1.dev0-py2.7.egg/lasagne/updates.py", line 110, in get_or_compute_grads
return theano.grad(loss_or_grads, params)
File "/usr/local/anaconda/lib/python2.7/site-packages/theano/gradient.py", line 432, in grad
raise TypeError("cost must be a scalar.")
TypeError: cost must be a scalar.

Update requirements file

I'm attempting to install the requirements to run this code and get the following error:

Could not find a version that satisfies the requirement Lasagne==0.2.dev1 (from -r requirements.txt (line 3)) (from versions: 0.1)
No matching distribution found for Lasagne==0.2.dev1 (from -r requirements.txt (line 3))

I'm assuming the requirements file is out of date. Could you update it please?

Edit:
I was using pip3 instead of pip2, nevertheless I get following error:
Could not find a version that satisfies the requirement nolearn==0.6a0.dev0 (from -r requirements.txt (line 6)) (from versions: 0.1b1, 0.2b1, 0.2, 0.3, 0.3.1, 0.4, 0.5b1, 0.5)
No matching distribution found for nolearn==0.6a0.dev0 (from -r requirements.txt (line 6))

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