Comments (5)
Hi,
You can use an arbitrary header, but keep in mind that it will be used as a gene name in the output tables. If you choose to use '|' as a separator, only the first element will be assigned as a name. For example: '> TRBV14-3|homosapiens|SRR0309337'.
Sincerely,
Mark
from mixcr.
Hi,
MiXCR should work with any species but requires the correct reference. This article will guide you through the process of creating a reference for non-model organisms, provided you have FASTA files with all gene segments.
Sincerely,
Mark
from mixcr.
Great, thank you so much.
Just one question, the headers of the gene segments need to be in a specific format?
I checked that link and in the example they are:
>IGHV12-348
GATGCTGGAGTTATCCAGTCA...
>IGHJJ1-528
TAACAACCAGGCCCAG...
And I have fasta files like this:
>aOncmyk_Chr8_CM023226.2_TRAV4-6_F_61345213_61345541
GTGACAGTCTTCAGAC...
>aOncmyk_Chr8_NC_048572_RS_TRAJ1_F_61944197_61944292
AGTGACTGGAACAGGA...
Thank you
from mixcr.
Please, I need a confirmation if "yes" or "no" and I will close this issue, thank you!
from mixcr.
Oh ok, thank you so much for your help!!
from mixcr.
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