Comments (2)
kvegesan-stjude
commented on July 1, 2024
1
This is embarrassing, but probably a good reminder for windows users. The file with the commands was created in windows before being run on the HPC. Windows automatically added a carriage return, so all the alignment files had '\r' appended to the output files of the alignment. This threw errors in the assembly process because it was trying to read files that didn't exist. You can close this issue.
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mizraelson
commented on July 1, 2024
Hi, can you please share the script that you are running when it fails?
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