Comments (1)
Hi, I would first check the refineTagsAndSort
report to see the percentage of reads that are being filtered out. To manually set the UMI filter, you can use the following parameters with the mixcr analyze
command:
-M.refineTagsAndSort.parameters.postFilter=null
-M.assemble.consensusAssemblerParameters.assembler.minRecordsPerConsensus=3
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