Comments (2)
millanek
commented on August 23, 2024
Hi
Sorry for taking long to reply. This lockdown was a bit overwhelming, with homeschooling my son, and having a deadline for a big review article. So I wasn't paying attention here.
Here is your reply:
In short, the difference is that the initial version (in v0.1) counted the widow-size using any SNPs for the trio, whereas the newer implementation counts only SNPs which contribute to the results. Not all SNPs in the trio contribute meaningfully to the gene-flow estimates, only some SNPs do.
I suggest you use the newer versions, from v0.2 r15 onwards (and best please just use the latest version). You will need to decrease the window size in SNPs to get approximately equivalent physical window sizes you were getting in v0.1.
Best wishes
Milan
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ijulca
commented on August 23, 2024
Don't worry. Everybody is being affected by the covid situation. Thank you for your answer. I will use the new version.
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