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amli's Introduction

Applied Machine Learning and Implementation

Overview

12 weeks, 2 hours / per week

20 min per episode, so six episodes per week.

This course will cover:

***** Spark MLlib

**** ML Pipeline and GraphX

*** Spark Core and Spark SQL

** Spark Streaming

* Scikit-learn for reference.

Textbooks

  1. Advanced Analytics with Spark
  2. Machine Learning with Spark
  3. The Lion Way: Machine Learning plus Intelligent Optimization
  4. Others...

week 1 Introduction

  1. Spark ABC
  2. Machine learning ABC
  3. Graph Computing ABC
  4. Demos for Spark, MLlib, and GraphX

week 2 Generalized Linear Model

  1. Logistic regression
  2. Linear regression
  3. SVM
  4. LASSO
  5. Ridge regression
  6. Applied demos such as Handwritten digits recognition, etc.

week 3 Recommendation

  1. Recommendation ALS
  2. Singular Value Decomposition
  3. The implementation in both MLlib and Mahout
  4. Applied demo of recommendation with PredictionIO.

week 4 Clustering

  1. k-means
  2. LDA
  3. Applied demo of geo-location clustering and topic modeling

week 5 Streaming-wised Machine Learning

  1. Lambda Architecture
  2. Parameter Server
  3. Several algorithms from Freeman labs
  4. Applied demo such as the zebrafish experiment

week 6 ML Pipeline

  1. Pipeline of Scikit-learn
  2. Pipeline of Spark (DataFrame, ML Pipeline, etc.)
  3. Applied demo (TBD)

week 7 Scientific Computing

  1. Scientific computing and Notices from Matrix Computation
  2. Matrix libs (in C/Fortran and Java)
  3. Matrix in MLlib
  4. Applied demo (TBD)

week 8 The Graph Computation Model

  1. Graph computing and libs
  2. revisit LDA, ALS
  3. Applied demo such as community detection for food network/recommendation.

week 9 Tree Model and Boosting

  1. Tree model
  2. Random forest
  3. Ensemble in Kaggle and practice
  4. Applied demo for ensemble

week 10 Evaluation

  1. Evaluation methods
  2. Implementations in MLlib
  3. Online / Offline evaluations

week 11 Optimization in Parallel

  1. Commonly used optimization algorithms
  2. Sequential gene of optimization algorithms
  3. BSP model to BSP+ model to SSP
  4. Future ways?

week 12 Rethink of practical machine learning and how to build a good system

  1. One, two, three of practical ML
  2. Rethink of practical machine learning
  3. How to build a great machine learning system?
  4. Compare with Mahout / Oryx2 / VM / ...

Survey of Advanced Analytics with Spark

| Chapter | Topic | Algorithms | Dataset | Source | |:-----:|:-----:|:-----:|:-----:|:-----:|:-----:| | 2 | Record Linkage | Entity resolution, record dedup, merge-and-purge, list washing | Some business data such as TCPDS | UCI ML repo | | 3 | Recommending | ALS | Who plays what or who rates what | Audioscrobbler | | 4 | Predicting Forest Cover | Decision Tree | The type of forest covering parcels of land in Colorado | UCI ML repo | | 5 | Anomaly detection in network traffic | K-means | Network intrusion data | KDD Cup 1999 Dataset | | 6 | Understanding wikipedia | Latent Semantic Analysis, SVD, TF-IDF, etc | wikipedia texts | wikipedia | | 7 | Analyzing Co-occurrence Networks | Massive graph algorithms in GraphX | MEDLINE citation index | US National Library of Medicine | | 8 | Geo and Temporal data analysis | Building sessions | New York Taxicab Data | New York City Taxi and Limousine Commission | | 9 | Estimating Finacial Risk | Monte Carlo Simulation | Stock Data | Yahoo! | | 10 | Analyzing Genomic Data | Massive genome analysis algorithms | Genome data | NCBI | | 11 | Analyzing Neuroimaging Data | Thunder | Images of zebrafish brains | Thunder repository |

Structure of directories

/src/chapterx --> The code snippets of each chapter

/src/chapterx/{java, python, scala} --> Code snippets written with Mahout, Scikit-learn, and Spark

Spark VS Scikit-learn

Algorithms

Type Algorithm Scikit-learn Spark
Classification Logistic Regression YES YES
Classification Perceptron YES
Classification Passive Aggressive Algorithms YES
Classification SVM YES YES
Classification Naive Bayes YES YES
Classification Decision Tree YES YES
Classification Ensemble methods YES YES
Classification Label Propogation YES YES (in GraphX)
Classification LDA and QDA YES
Regression Ordinary Least Square YES YES
Regression Ridge Regression YES YES
Regression LASSO YES YES
Regression Elastic Net YES
Regression Multi-task LASSO YES
Regression Least Angle Regression YES
Regression LARS LASSO YES
Regression Orthogonal Matching Pursuit YES
Regression Bayesian Regression YES
Regression Polynomial Regression YES
Regression Nearest Neighbor YES YES
Regression Gaussian Process YES
Regression Isotonic Regression YES
Clustering K-means YES YES
Clustering Affinity Propagation YES
Clustering Mean shift YES
Clustering Spectral Clustering YES
Clustering Ward YES
Clustering Agglomerative clustering YES
Clustering DBSCAN YES
Clustering Gaussian Mixtures YES
Dimension Reduction PCA YES YES
Dimension Reduction SVD / LSA YES YES
Dimension Reduction Dictionary Learning YES
Dimension Reduction Factor Analysis YES
Dimension Reduction ICA YES
Dimension Reduction NMF YES
Model Selection Cross Validation YES YES
Model Selection Grid Search YES
Model Selection Pipeline YES YES
Model Selection Feature Union YES YES
Model Selection Model Evaluation YES YES
Model Selection Model Presistence YES
Model Selection Validation Curves YES
Preprocessing Standardization YES YES
Preprocessing Encoding categorical features YES YES (dependency)
Preprocessing Binarization YES
Preprocessing Normalization YES YES
Preprocessing Label preprocessing YES
Preprocessing Imputation of missing values YES
Preprocessing Unsupervised data reduction YES

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