Experimental port of MAGENTA software to Python. https://www.broadinstitute.org/mpg/magenta/
Not fully tested yet!
Note: For maintainability, this script is intentionally un-pythonic, following the original code structure of MAGENTA written in MATLAB.
git clone https://github.com/mkanai/MAGENTApy.git
cd MAGENTApy
python Run_MAGENTA.py
Edit config.yml
, or specify your own configuration by --config myconfig.yml
. All parameters are compatible with the original MAGENTA.
- numpy
- scipy
- pandas
- pyaml
MAGENTA is copyright by Ayellet Segre, Mark Daly, and David Altshuler of The Broad Institute.