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Home Page: http://mne.tools/mne-docker/
License: BSD 3-Clause "New" or "Revised" License
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ENH: Add mne-bids-pipeline
Once we have a proper PyPI and conda-forge release, can we close this and make a PR to mne-docker to add it there? It would be nice to keep mne-installers and mne-docker in sync. Even better if mne-docker could use mne-installers to do this...
Originally posted by @larsoner in mne-tools/mne-bids-pipeline#594 (comment)
Shall I share my Dockerfile?
Hello, I've already created an MNE Dockerfile that also starts Xvfb to allow for 3d rendering. Shall I just dump that here? Or what is the intended procedure for this repo?
Best wishes!
MNE-BIDS-Pipeline bids-app
I wondered, if there was an idea to wrap it as bids-app for even more turnkey use?
docker-compose build fails on fresh install
Hi,
I just cloned this repository to my computer and installed docker and ran the line 'docker-compose build' and it threw the following error. I am using a Mac if that's relevant.
I am keen to set up a docker image that can run MNE-Python, so Im available to help debug this issue, but I am new to docker, so any direction is appreciated.
git:(main) docker-compose build
Building scheduler
[+] Building 171.6s (12/12) FINISHED
=> [internal] load build definition from Dockerfile 0.0s
=> => transferring dockerfile: 813B 0.0s
=> [internal] load .dockerignore 0.0s
=> => transferring context: 2B 0.0s
=> [internal] load metadata for docker.io/continuumio/miniconda3:4.8.2 9.7s
=> [1/7] FROM docker.io/continuumio/miniconda3:4.8.2@sha256:456e3196bf3ffb13fee7c9216db4b18b5e6f4d37090b31df3e030992 30.7s
=> => resolve docker.io/continuumio/miniconda3:4.8.2@sha256:456e3196bf3ffb13fee7c9216db4b18b5e6f4d37090b31df3e0309926 0.0s
=> => sha256:456e3196bf3ffb13fee7c9216db4b18b5e6f4d37090b31df3e0309926e98cfe2 953B / 953B 0.0s
=> => sha256:b4adc22212f1c4628a1922a5669640e86734d0da3c26a0c35cb034e388c033ae 3.19kB / 3.19kB 0.0s
=> => sha256:68ced04f60ab5c7a5f1d0b0b4e7572c5a4c8cce44866513d30d9df1a15277d6b 27.09MB / 27.09MB 15.3s
=> => sha256:9c388eb6d33c40662539172f0d9a357287bd1cd171692ca5c08db2886bc527c3 80.22MB / 80.22MB 25.1s
=> => sha256:96cf53b3a9dd496f4c91ab86eeadca2c8a31210c2e5c2a82badbb0dcf8c8f76b 50.36MB / 50.36MB 20.6s
=> => extracting sha256:68ced04f60ab5c7a5f1d0b0b4e7572c5a4c8cce44866513d30d9df1a15277d6b 0.9s
=> => extracting sha256:9c388eb6d33c40662539172f0d9a357287bd1cd171692ca5c08db2886bc527c3 3.3s
=> => extracting sha256:96cf53b3a9dd496f4c91ab86eeadca2c8a31210c2e5c2a82badbb0dcf8c8f76b 1.9s
=> [internal] load build context 0.0s
=> => transferring context: 871B 0.0s
=> [2/7] RUN conda install --yes -c conda-forge python==3.8 python-blosc cytoolz dask==2021.4.0 108.1s
=> [3/7] RUN pip install s3fs 10.1s
=> [4/7] RUN pip install mne 9.4s
=> [5/7] RUN pip install bokeh 0.6s
=> [6/7] COPY prepare.sh /usr/bin/prepare.sh 0.0s
=> [7/7] RUN mkdir /opt/app 1.2s
=> exporting to image 1.7s
=> => exporting layers 1.7s
=> => writing image sha256:305f452ab8147df10a30a91fa8d2a687fd912af928604533c6edb2055c7d7286 0.0s
=> => naming to docker.io/mnetools/mne-python 0.0s
Use 'docker scan' to run Snyk tests against images to find vulnerabilities and learn how to fix them
Building worker
[+] Building 1.1s (12/12) FINISHED
=> [internal] load build definition from Dockerfile 0.0s
=> => transferring dockerfile: 37B 0.0s
=> [internal] load .dockerignore 0.0s
=> => transferring context: 2B 0.0s
=> [internal] load metadata for docker.io/continuumio/miniconda3:4.8.2 1.0s
=> [1/7] FROM docker.io/continuumio/miniconda3:4.8.2@sha256:456e3196bf3ffb13fee7c9216db4b18b5e6f4d37090b31df3e0309926 0.0s
=> [internal] load build context 0.0s
=> => transferring context: 32B 0.0s
=> CACHED [2/7] RUN conda install --yes -c conda-forge python==3.8 python-blosc cytoolz dask==202 0.0s
=> CACHED [3/7] RUN pip install s3fs 0.0s
=> CACHED [4/7] RUN pip install mne 0.0s
=> CACHED [5/7] RUN pip install bokeh 0.0s
=> CACHED [6/7] COPY prepare.sh /usr/bin/prepare.sh 0.0s
=> CACHED [7/7] RUN mkdir /opt/app 0.0s
=> exporting to image 0.0s
=> => exporting layers 0.0s
=> => writing image sha256:305f452ab8147df10a30a91fa8d2a687fd912af928604533c6edb2055c7d7286 0.0s
=> => naming to docker.io/mnetools/mne-python 0.0s
Use 'docker scan' to run Snyk tests against images to find vulnerabilities and learn how to fix them
Building base-notebook
[+] Building 0.0s (1/1) FINISHED
=> ERROR [internal] load git source github.com/jupyter/docker-stacks.git#master:base-notebook 0.0s
------
> [internal] load git source github.com/jupyter/docker-stacks.git#master:base-notebook:
------
failed to solve with frontend dockerfile.v0: failed to read dockerfile: failed to load cache key: subdir not supported yet
ERROR: Service 'base-notebook' failed to build : Build failed
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