mnishida / pymwm Goto Github PK

running install
running bdist_egg
running egg_info
writing pymwm.egg-info/PKG-INFO
writing dependency_links to pymwm.egg-info/dependency_links.txt
writing entry points to pymwm.egg-info/entry_points.txt
writing requirements to pymwm.egg-info/requires.txt
writing top-level names to pymwm.egg-info/top_level.txt
package init file 'tests/__init__.py' not found (or not a regular file)
package init file 'examples/__init__.py' not found (or not a regular file)
reading manifest file 'pymwm.egg-info/SOURCES.txt'
adding license file 'LICENSE'
writing manifest file 'pymwm.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
copying pymwm/waveguide.py -> build/lib.linux-x86_64-3.9/pymwm
copying pymwm/__init__.py -> build/lib.linux-x86_64-3.9/pymwm
creating build/lib.linux-x86_64-3.9/tests
copying tests/test_cylinder_samples.py -> build/lib.linux-x86_64-3.9/tests
copying tests/test_slit_coefs.py -> build/lib.linux-x86_64-3.9/tests
copying tests/test_database.py -> build/lib.linux-x86_64-3.9/tests
copying tests/test_cylinder_coefs.py -> build/lib.linux-x86_64-3.9/tests
copying tests/test_cylinder.py -> build/lib.linux-x86_64-3.9/tests
copying tests/test_slit_samples.py -> build/lib.linux-x86_64-3.9/tests
copying tests/test_slit.py -> build/lib.linux-x86_64-3.9/tests
copying pymwm/cylinder/utils/cylinder_utils.cpp -> build/lib.linux-x86_64-3.9/pymwm/cylinder/utils
creating build/lib.linux-x86_64-3.9/pymwm/slit
creating build/lib.linux-x86_64-3.9/pymwm/slit/utils
copying pymwm/slit/utils/slit_utils.cpp -> build/lib.linux-x86_64-3.9/pymwm/slit/utils
creating build/lib.linux-x86_64-3.9/examples
copying examples/examples.ipynb -> build/lib.linux-x86_64-3.9/examples
running build_ext
building 'pymwm.cylinder.utils.cylinder_utils' extension
C compiler: gcc -pthread -B /home/jmatres/miniconda3/compiler_compat -Wl,--sysroot=/ -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/jmatres/miniconda3/include -fPIC -O2 -isystem /home/jmatres/miniconda3/include -fPIC

compile options: '-I/home/jmatres/miniconda3/lib/python3.9/site-packages/numpy/core/include -I. -I/opt/intel/mkl/include -I/home/jmatres/miniconda3/include/python3.9 -c'
extra options: '-fPIC -m64 -fopenmp -march=native -O3 -ftree-vectorizer-verbose=2 -Wl,--no-as-needed'
gcc: pymwm/cylinder/utils/cylinder_utils.cpp
In file included from /home/jmatres/miniconda3/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
                 from /home/jmatres/miniconda3/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /home/jmatres/miniconda3/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from pymwm/cylinder/utils/cylinder_utils.cpp:674:
/home/jmatres/miniconda3/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
g++ -pthread -B /home/jmatres/miniconda3/compiler_compat -Wl,--sysroot=/ -shared -Wl,-rpath,/home/jmatres/miniconda3/lib -Wl,-rpath-link,/home/jmatres/miniconda3/lib -L/home/jmatres/miniconda3/lib -Wl,-rpath,/home/jmatres/miniconda3/lib -Wl,-rpath-link,/home/jmatres/miniconda3/lib -L/home/jmatres/miniconda3/lib build/temp.linux-x86_64-3.9/pymwm/cylinder/utils/cylinder_utils.o -L/opt/intel/mkl/lib/intel64 -lmkl_rt -o build/lib.linux-x86_64-3.9/pymwm/cylinder/utils/cylinder_utils.cpython-39-x86_64-linux-gnu.so -shared
/home/jmatres/miniconda3/compiler_compat/ld: cannot find -lmkl_rt
collect2: error: ld returned 1 exit status
error: Command "g++ -pthread -B /home/jmatres/miniconda3/compiler_compat -Wl,--sysroot=/ -shared -Wl,-rpath,/home/jmatres/miniconda3/lib -Wl,-rpath-link,/home/jmatres/miniconda3/lib -L/home/jmatres/miniconda3/lib -Wl,-rpath,/home/jmatres/miniconda3/lib -Wl,-rpath-link,/home/jmatres/miniconda3/lib -L/home/jmatres/miniconda3/lib build/temp.linux-x86_64-3.9/pymwm/cylinder/utils/cylinder_utils.o -L/opt/intel/mkl/lib/intel64 -lmkl_rt -o build/lib.linux-x86_64-3.9/pymwm/cylinder/utils/cylinder_utils.cpython-39-x86_64-linux-gnu.so -shared" failed with exit status 1