moodymudskipper / blame Goto Github PK
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License: Other
Semantic Version Control for R
License: Other
Before we open individual issues, let's brainstorm here.
library(blame)
hist_data <- git_history("https://github.com/moodymudskipper/unglue", "main")
#> Created local repo at: C:\Users\Dan\AppData\Local\Temp\Rtmpc35YEN\file98e858372650
#> Warning in system(log_cmd, intern = TRUE): running command 'git -C
#> 'C:\Users\Dan\AppData\Local\Temp\Rtmpc35YEN\file98e858372650' log main
#> --pretty=format:'%h,%ae,%cI,%s'' had status 128
#> Wrangle commits
#> Collect changed files
#> Error in `dplyr::mutate()`:
#> i In argument: `file = purrr::map(commit, get_affected_files, .progress
#> = TRUE)`.
#> Caused by error in `vctrs_vec_compat()`:
#> ! object 'commit' not found
#> Backtrace:
#> x
#> 1. +-blame::git_history(...)
#> 2. | +-tidyr::unnest_longer(...)
#> 3. | | \-tidyr:::check_data_frame(data)
#> 4. | | \-base::is.data.frame(x)
#> 5. | +-dplyr::mutate(...)
#> 6. | \-dplyr:::mutate.data.frame(commits_df, file = purrr::map(commit, get_affected_files, .progress = TRUE))
#> 7. | \-dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
#> 8. | +-base::withCallingHandlers(...)
#> 9. | \-dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
#> 10. | \-mask$eval_all_mutate(quo)
#> 11. | \-dplyr (local) eval()
#> 12. +-purrr::map(commit, get_affected_files, .progress = TRUE)
#> 13. | \-purrr:::map_("list", .x, .f, ..., .progress = .progress)
#> 14. | \-purrr:::vctrs_vec_compat(.x, .purrr_user_env)
#> 15. \-base::.handleSimpleError(...)
#> 16. \-dplyr (local) h(simpleError(msg, call))
#> 17. \-rlang::abort(message, class = error_class, parent = parent, call = error_call)
Created on 2023-09-16 with reprex v2.0.2
sessioninfo::session_info()
#> - Session info ---------------------------------------------------------------
#> setting value
#> version R version 4.1.3 (2022-03-10)
#> os Windows 10 x64 (build 19045)
#> system x86_64, mingw32
#> ui RTerm
#> language (EN)
#> collate French_France.1252
#> ctype French_France.1252
#> tz Europe/Paris
#> date 2023-09-16
#> pandoc 3.1.1 @ C:/Program Files/RStudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown)
#>
#> - Packages -------------------------------------------------------------------
#> package * version date (UTC) lib source
#> askpass 1.1 2019-01-13 [1] CRAN (R 4.1.0)
#> blame * 0.0.0.9000 2023-09-15 [1] Github (moodymudskipper/blame@4e87b0b)
#> cli 3.6.1 2023-03-23 [1] CRAN (R 4.1.3)
#> credentials 1.3.2 2021-11-29 [1] CRAN (R 4.1.2)
#> digest 0.6.31 2022-12-11 [1] CRAN (R 4.1.3)
#> dplyr 1.1.2 2023-04-20 [1] CRAN (R 4.1.3)
#> evaluate 0.20 2023-01-17 [1] CRAN (R 4.1.3)
#> fansi 1.0.4 2023-01-22 [1] CRAN (R 4.1.3)
#> fastmap 1.1.1 2023-02-24 [1] CRAN (R 4.1.3)
#> fs 1.6.1 2023-02-06 [1] CRAN (R 4.1.3)
#> generics 0.1.3 2022-07-05 [1] CRAN (R 4.1.3)
#> gert 1.9.2 2022-12-05 [1] CRAN (R 4.1.3)
#> glue 1.6.2 2022-02-24 [1] CRAN (R 4.1.3)
#> htmltools 0.5.5 2023-03-23 [1] CRAN (R 4.1.3)
#> knitr 1.42 2023-01-25 [1] CRAN (R 4.1.3)
#> lifecycle 1.0.3 2022-10-07 [1] CRAN (R 4.1.3)
#> magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.1.3)
#> openssl 2.0.6 2023-03-09 [1] CRAN (R 4.1.3)
#> pillar 1.9.0 2023-03-22 [1] CRAN (R 4.1.3)
#> pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.1.0)
#> purrr 1.0.1 2023-01-10 [1] CRAN (R 4.1.3)
#> R.cache 0.16.0 2022-07-21 [1] CRAN (R 4.1.3)
#> R.methodsS3 1.8.2 2022-06-13 [1] CRAN (R 4.1.3)
#> R.oo 1.25.0 2022-06-12 [1] CRAN (R 4.1.3)
#> R.utils 2.12.2 2022-11-11 [1] CRAN (R 4.1.3)
#> R6 2.5.1 2021-08-19 [1] CRAN (R 4.1.0)
#> reprex 2.0.2 2022-08-17 [1] CRAN (R 4.1.3)
#> rlang 1.1.0 2023-03-14 [1] CRAN (R 4.1.3)
#> rmarkdown 2.21 2023-03-26 [1] CRAN (R 4.1.3)
#> rstudioapi 0.14 2022-08-22 [1] CRAN (R 4.1.3)
#> sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.1.2)
#> styler 1.9.1 2023-03-04 [1] CRAN (R 4.1.3)
#> sys 3.4.1 2022-10-18 [1] CRAN (R 4.1.3)
#> tibble 3.2.1 2023-03-20 [1] CRAN (R 4.1.3)
#> tidyr 1.3.0 2023-01-24 [1] CRAN (R 4.1.3)
#> tidyselect 1.2.0 2022-10-10 [1] CRAN (R 4.1.3)
#> utf8 1.2.3 2023-01-31 [1] CRAN (R 4.1.3)
#> vctrs 0.6.2 2023-04-19 [1] CRAN (R 4.1.3)
#> withr 2.5.0 2022-03-03 [1] CRAN (R 4.1.3)
#> xfun 0.39 2023-04-20 [1] CRAN (R 4.1.3)
#> yaml 2.3.7 2023-01-23 [1] CRAN (R 4.1.3)
#>
#> [1] E:/WINDOWS/MesDocuments/R/win-library/4.1
#> [2] C:/Program Files/R/R-4.1.3/library
#>
#> ------------------------------------------------------------------------------
Here is more insight:
#inside debugonce(git_history)
commits <- system(log_cmd, intern = TRUE)
commits
#[1] "fatal: cannot change to ''C:\\Users\\Dan\\AppData\\Local\\Temp\\RtmpYtSANP\\file407c551f6f03'': Invalid argument"
#attr(,"status")
#[1] 128
dir.exists(repo)
#[1] TRUE
gert::git_ls(repo) |> length()
#[1] 4
gert::git_info(repo) |> length()
#[1] 8
gert::git_log(repo) |> length()
#Error in gert::git_log(repo) :
# Failed to find git reference 'C:\Users\Dan\AppData\Local\Temp\RtmpYtSANP\file407c551f6f03'
system("git version", intern = TRUE)
#[1] "git version 2.38.1.windows.1"
I have the same problem with repo="https://github.com/DanChaltiel/crosstable"
.
If this is a git version problem, it seems that parsing the result of the system code is not a problem: https://stackoverflow.com/a/67811664/3888000.
EDITS:
2.42.0.windows.2
with no difference.log_cmd <- sprintf('git -C "%s" log %s --pretty=format:"%%h,%%ae,%%cI,%%s"', repo, branch)
(switching single and double quotes) with a better result:commits
#[1] "fatal: ambiguous argument 'main': unknown revision or path not in the working tree."
#[2] "Use '--' to separate paths from revisions, like this:"
#[3] "'git <command> [<revision>...] -- [<file>...]'"
#attr(,"status")
#[1] 128
main
from the commandI'm really not a git expert so I'm afraid that's all the help I can provide
This is a great tool that allows us to rewrite git history into a new repo: git-filter-repo : https://github.com/newren/git-filter-repo
@krlmlr's idea is that we might first rewrite the full history by storing a function in each file. Then we don't need the concept of R object anymore for filtering.
This idea plays very well with {pkg}, and is something we might leverage for {blame}
{pkg} proposes packages and repos as objects. So far repo objects have methods mapping to git commands but don't contain commits or branches as objects, this is something that might be interesting to do.
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