Comments (1)
Transcript Fields
- Transcript ID
- Transcript Name
- Gene ID
- Gene Name
- Chromosome
- Start
- End
- Strand
- Exon IDs
- Exon starts (delimited list)
- Exon ends (delimited list)
- Annotated (0/1)
- Dataset of origin
- This is the name of the annotation if known
- Datasets in which transcript was found so far (delimited list)
from talon.
Related Issues (20)
- Key Error: "gene novelty" HOT 1
- Annotation name not found HOT 11
- Error when using non-human GTF HOT 2
- What database to use? HOT 2
- TALON on single-cell data HOT 10
- Multithread bam sort HOT 2
- Error message : ValueError: SAM transcript 463c55e7-91c0-45cf-9630-122afc9a2267 lacks an MD tag HOT 1
- I get 'Annotation name 'ADV5_annot' not found in this database' in step talon_abundance HOT 1
- numpy<1.24.0 should be added as a requirement
- Error: value too large to convert to int16_t HOT 1
- Single cell reads appear to be unlabelled when filtering transcripts HOT 1
- How to visualize custom gtf? HOT 1
- operand type error in talon_initialize_database HOT 1
- Duplicate transcripts - forward and reverse. HOT 3
- talon_filter_transcript --minCounts with --maxFracA HOT 1
- Rules for considering splicing variants as identical in TALON HOT 2
- fail to extract CB field HOT 2
- What should I do if I have reads that are reverse complement to the original RNA sequences? HOT 2
- Isoforms defined by reads with high fraction A (>0.5) HOT 2
- Abundance and fraction_as not showing properly
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from talon.