mpi-dortmund / napari-tomotwin Goto Github PK

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AttributeError                            Traceback (most recent call last)
File /hpc/projects/group.czii/saugat.kandel/miniforge3/envs/napari-tomotwin/lib/python3.10/site-packages/vispy/app/backends/_qt.py:496, in QtBaseCanvasBackend.mousePressEvent(self=<vispy.app.backends._qt.CanvasBackendDesktop object>, ev=<PyQt5.QtGui.QMouseEvent object>)
    494 if self._vispy_canvas is None:
    495     return
--> 496 self._vispy_mouse_press(
        self = <vispy.app.backends._qt.CanvasBackendDesktop object at 0x7f0c800ae290>
        ev = <PyQt5.QtGui.QMouseEvent object at 0x7f0c2a556d40>
        BUTTONMAP = {0: 0, 1: 1, 2: 2, 4: 3, 8: 4, 16: 5}
    497     native=ev,
    498     pos=_get_event_xy(ev),
    499     button=BUTTONMAP.get(ev.button(), 0),
    500     modifiers=self._modifiers(ev),
    501 )

File /hpc/projects/group.czii/saugat.kandel/miniforge3/envs/napari-tomotwin/lib/python3.10/site-packages/vispy/app/base.py:184, in BaseCanvasBackend._vispy_mouse_press(self=<vispy.app.backends._qt.CanvasBackendDesktop object>, **kwargs={'button': 1, 'buttons': [], 'last_event': <MouseEvent blocked=False button=None buttons=[]...urces=[] time=1716403732.2130306 type=mouse_move>, 'last_mouse_press': None, 'modifiers': (), 'native': <PyQt5.QtGui.QMouseEvent object>, 'pos': (692, 600), 'press_event': None})
    181 def _vispy_mouse_press(self, **kwargs):
    182     # default method for delivering mouse press events to the canvas
    183     kwargs.update(self._vispy_mouse_data)
--> 184     ev = self._vispy_canvas.events.mouse_press(**kwargs)
        self._vispy_canvas.events.mouse_press = <vispy.util.event.EventEmitter object at 0x7f0c800bc1f0>
        kwargs = {'native': <PyQt5.QtGui.QMouseEvent object at 0x7f0c2a556d40>, 'pos': (692, 600), 'button': 1, 'modifiers': (), 'buttons': [], 'press_event': None, 'last_event': <MouseEvent blocked=False button=None buttons=[] delta=[0. 0.] handled=False is_dragging=False last_event=None modifiers=() native=<PyQt5.QtGui.QMouseEvent object at 0x7f0c2a556d40> pos=[692 600] press_event=None source=None sources=[] time=1716403732.2130306 type=mouse_move>, 'last_mouse_press': None}
        self = <vispy.app.backends._qt.CanvasBackendDesktop object at 0x7f0c800ae290>
        self._vispy_canvas.events = <vispy.util.event.EmitterGroup object at 0x7f0c800bc1c0>
        self._vispy_canvas = <VispyCanvas (PyQt5) at 0x7f0c800ab850>
    185     if self._vispy_mouse_data['press_event'] is None:
    186         self._vispy_mouse_data['press_event'] = ev

File /hpc/projects/group.czii/saugat.kandel/miniforge3/envs/napari-tomotwin/lib/python3.10/site-packages/vispy/util/event.py:453, in EventEmitter.__call__(self=<vispy.util.event.EventEmitter object>, *args=(), **kwargs={'button': 1, 'buttons': [], 'last_event': <MouseEvent blocked=False button=None buttons=[]...urces=[] time=1716403732.2130306 type=mouse_move>, 'last_mouse_press': None, 'modifiers': (), 'native': <PyQt5.QtGui.QMouseEvent object>, 'pos': (692, 600), 'press_event': None})
    450 if self._emitting > 1:
    451     raise RuntimeError('EventEmitter loop detected!')
--> 453 self._invoke_callback(cb, event)
        event = <MouseEvent blocked=False button=1 buttons=[1] delta=[0. 0.] handled=False is_dragging=False last_event=MouseEvent modifiers=() native=<PyQt5.QtGui.QMouseEvent object at 0x7f0c2a556d40> pos=[692 600] press_event=None source=None sources=[] time=1716403732.224965 type=mouse_press>
        self = <vispy.util.event.EventEmitter object at 0x7f0c800bc1f0>
        cb = <bound method QtViewer.on_mouse_press of <napari._qt.qt_viewer.QtViewer object at 0x7f0c800a2b90>>
    454 if event.blocked:
    455     break

File /hpc/projects/group.czii/saugat.kandel/miniforge3/envs/napari-tomotwin/lib/python3.10/site-packages/vispy/util/event.py:471, in EventEmitter._invoke_callback(self=<vispy.util.event.EventEmitter object>, cb=<bound method QtViewer.on_mouse_press of <napari._qt.qt_viewer.QtViewer object>>, event=<MouseEvent blocked=False button=1 buttons=[1] d...urces=[] time=1716403732.224965 type=mouse_press>)
    469     cb(event)
    470 except Exception:
--> 471     _handle_exception(self.ignore_callback_errors,
        self = <vispy.util.event.EventEmitter object at 0x7f0c800bc1f0>
        cb = <bound method QtViewer.on_mouse_press of <napari._qt.qt_viewer.QtViewer object at 0x7f0c800a2b90>>
        event = <MouseEvent blocked=False button=1 buttons=[1] delta=[0. 0.] handled=False is_dragging=False last_event=MouseEvent modifiers=() native=<PyQt5.QtGui.QMouseEvent object at 0x7f0c2a556d40> pos=[692 600] press_event=None source=None sources=[] time=1716403732.224965 type=mouse_press>
        (cb, event) = (<bound method QtViewer.on_mouse_press of <napari._qt.qt_viewer.QtViewer object at 0x7f0c800a2b90>>, <MouseEvent blocked=False button=1 buttons=[1] delta=[0. 0.] handled=False is_dragging=False last_event=MouseEvent modifiers=() native=<PyQt5.QtGui.QMouseEvent object at 0x7f0c2a556d40> pos=[692 600] press_event=None source=None sources=[] time=1716403732.224965 type=mouse_press>)
    472                       self.print_callback_errors,
    473                       self, cb_event=(cb, event))

File /hpc/projects/group.czii/saugat.kandel/miniforge3/envs/napari-tomotwin/lib/python3.10/site-packages/vispy/util/event.py:469, in EventEmitter._invoke_callback(self=<vispy.util.event.EventEmitter object>, cb=<bound method QtViewer.on_mouse_press of <napari._qt.qt_viewer.QtViewer object>>, event=<MouseEvent blocked=False button=1 buttons=[1] d...urces=[] time=1716403732.224965 type=mouse_press>)
    467 def _invoke_callback(self, cb, event):
    468     try:
--> 469         cb(event)
        cb = <bound method QtViewer.on_mouse_press of <napari._qt.qt_viewer.QtViewer object at 0x7f0c800a2b90>>
        event = <MouseEvent blocked=False button=1 buttons=[1] delta=[0. 0.] handled=False is_dragging=False last_event=MouseEvent modifiers=() native=<PyQt5.QtGui.QMouseEvent object at 0x7f0c2a556d40> pos=[692 600] press_event=None source=None sources=[] time=1716403732.224965 type=mouse_press>
    470     except Exception:
    471         _handle_exception(self.ignore_callback_errors,
    472                           self.print_callback_errors,
    473                           self, cb_event=(cb, event))

File /hpc/projects/group.czii/saugat.kandel/miniforge3/envs/napari-tomotwin/lib/python3.10/site-packages/napari/_qt/qt_viewer.py:1201, in QtViewer.on_mouse_press(self=<napari._qt.qt_viewer.QtViewer object>, event=<MouseEvent blocked=False button=1 buttons=[1] d...urces=[] time=1716403732.224965 type=mouse_press>)
   1193 def on_mouse_press(self, event):
   1194     """Called whenever mouse pressed in canvas.
   1195 
   1196     Parameters
   (...)
   1199         The vispy event that triggered this method.
   1200     """
-> 1201     self._process_mouse_event(mouse_press_callbacks, event)
        event = <MouseEvent blocked=False button=1 buttons=[1] delta=[0. 0.] handled=False is_dragging=False last_event=MouseEvent modifiers=() native=<PyQt5.QtGui.QMouseEvent object at 0x7f0c2a556d40> pos=[692 600] press_event=None source=None sources=[] time=1716403732.224965 type=mouse_press>
        self = <napari._qt.qt_viewer.QtViewer object at 0x7f0c800a2b90>

File /hpc/projects/group.czii/saugat.kandel/miniforge3/envs/napari-tomotwin/lib/python3.10/site-packages/napari/_qt/qt_viewer.py:1156, in QtViewer._process_mouse_event(self=<napari._qt.qt_viewer.QtViewer object>, mouse_callbacks=<function mouse_press_callbacks>, event=<ReadOnlyWrapper at 0x7f0c01647040 for MouseEvent>)
   1154 # Put a read only wrapper on the event
   1155 event = ReadOnlyWrapper(event, exceptions=('handled',))
-> 1156 mouse_callbacks(self.viewer, event)
        event = <ReadOnlyWrapper at 0x7f0c01647040 for MouseEvent at 0x7f0c288d1ed0>
        mouse_callbacks = <function mouse_press_callbacks at 0x7f0c89d52cb0>
        self.viewer = Viewer(camera=Camera(center=(0.0, 314.5, 314.5), zoom=1.019353960150897, angles=(0.0, 0.0, 90.0), perspective=0.0, mouse_pan=True, mouse_zoom=True), cursor=Cursor(position=(91.0, 763.3136607686552, 462.14252269423287), scaled=True, size=10, style=<CursorStyle.STANDARD: 'standard'>), dims=Dims(ndim=3, ndisplay=2, last_used=0, range=((0.0, 184.0, 1.0), (0.0, 630.0, 1.0), (0.0, 630.0, 1.0)), current_step=(91, 314, 314), order=(0, 1, 2), axis_labels=('0', '1', '2')), grid=GridCanvas(stride=1, shape=(-1, -1), enabled=False), layers=[<Image layer '...ddings/TS_1_1/TS_1_1_noctf.mrc' at 0x7f0c2a582e00>, <Labels layer 'UMAP' at 0x7f0b19471ff0>], help='use <1> for activate the label eraser, use <2> for activate the paint brush, use <3> for activate the fill bucket, use <4> for pick mode', status={'layer_base': 'UMAP', 'source_type': '', 'plugin': '', 'coordinates': ' [91 763 462]'}, tooltip=Tooltip(visible=False, text=''), theme='dark', title='napari', mouse_over_canvas=True, mouse_move_callbacks=[], mouse_drag_callbacks=[functools.partial(<function drag_circle_callback at 0x7f0c2a5563b0>, <napari_clusters_plotter._plotter.PlotterWidget object at 0x7f0c2875e560>)], mouse_double_click_callbacks=[], mouse_wheel_callbacks=[<function dims_scroll at 0x7f0c88d2a170>], _persisted_mouse_event={}, _mouse_drag_gen={}, _mouse_wheel_gen={}, keymap={})
        self = <napari._qt.qt_viewer.QtViewer object at 0x7f0c800a2b90>
   1158 layer = self.viewer.layers.selection.active
   1159 if layer is not None:

File /hpc/projects/group.czii/saugat.kandel/miniforge3/envs/napari-tomotwin/lib/python3.10/site-packages/napari/utils/interactions.py:121, in mouse_press_callbacks(obj=Viewer(camera=Camera(center=(0.0, 314.5, 314.5),...ouse_drag_gen={}, _mouse_wheel_gen={}, keymap={}), event=<ReadOnlyWrapper at 0x7f0c01647040 for MouseEvent>)
    118 # iterate through drag callback functions
    119 for mouse_drag_func in obj.mouse_drag_callbacks:
    120     # execute function to run press event code
--> 121     gen = mouse_drag_func(obj, event)
        mouse_drag_func = functools.partial(<function drag_circle_callback at 0x7f0c2a5563b0>, <napari_clusters_plotter._plotter.PlotterWidget object at 0x7f0c2875e560>)
        obj = Viewer(camera=Camera(center=(0.0, 314.5, 314.5), zoom=1.019353960150897, angles=(0.0, 0.0, 90.0), perspective=0.0, mouse_pan=True, mouse_zoom=True), cursor=Cursor(position=(91.0, 763.3136607686552, 462.14252269423287), scaled=True, size=10, style=<CursorStyle.STANDARD: 'standard'>), dims=Dims(ndim=3, ndisplay=2, last_used=0, range=((0.0, 184.0, 1.0), (0.0, 630.0, 1.0), (0.0, 630.0, 1.0)), current_step=(91, 314, 314), order=(0, 1, 2), axis_labels=('0', '1', '2')), grid=GridCanvas(stride=1, shape=(-1, -1), enabled=False), layers=[<Image layer '...ddings/TS_1_1/TS_1_1_noctf.mrc' at 0x7f0c2a582e00>, <Labels layer 'UMAP' at 0x7f0b19471ff0>], help='use <1> for activate the label eraser, use <2> for activate the paint brush, use <3> for activate the fill bucket, use <4> for pick mode', status={'layer_base': 'UMAP', 'source_type': '', 'plugin': '', 'coordinates': ' [91 763 462]'}, tooltip=Tooltip(visible=False, text=''), theme='dark', title='napari', mouse_over_canvas=True, mouse_move_callbacks=[], mouse_drag_callbacks=[functools.partial(<function drag_circle_callback at 0x7f0c2a5563b0>, <napari_clusters_plotter._plotter.PlotterWidget object at 0x7f0c2875e560>)], mouse_double_click_callbacks=[], mouse_wheel_callbacks=[<function dims_scroll at 0x7f0c88d2a170>], _persisted_mouse_event={}, _mouse_drag_gen={}, _mouse_wheel_gen={}, keymap={})
        event = <ReadOnlyWrapper at 0x7f0c01647040 for MouseEvent at 0x7f0c288d1ed0>
    122     # if function returns a generator then try to iterate it
    123     if inspect.isgenerator(gen):

File ~/.local/lib/python3.10/site-packages/napari_tomotwin/anchor_tool.py:50, in drag_circle_callback(plotter_widget=<napari_clusters_plotter._plotter.PlotterWidget object>, viewer=Viewer(camera=Camera(center=(0.0, 314.5, 314.5),...ouse_drag_gen={}, _mouse_wheel_gen={}, keymap={}), event=<ReadOnlyWrapper at 0x7f0c01647040 for MouseEvent>)
     49 def drag_circle_callback(plotter_widget, viewer, event):
---> 50     data_coordinates = plotter_widget.layer_select.value.world_to_data(
        plotter_widget = <napari_clusters_plotter._plotter.PlotterWidget object at 0x7f0c2875e560>
        event = <ReadOnlyWrapper at 0x7f0c01647040 for MouseEvent at 0x7f0c288d1ed0>
     51         event.position
     52     )
     53     _draw_circle(
     54         plotter_widget,
     55         data_coordinates,
     56         plotter_widget.layer_select.value,
     57         plotter_widget.layer_select.value.features,
     58     )

AttributeError: 'PlotterWidget' object has no attribute 'layer_select'

napari path/to/tomo.mrc path/to/umap/tomo_label_mask.mrci

Error
  File "/mnt/data/twagner/Projects/napari-tomotwin/src/napari_tomotwin/load_umap.py", line 24, in _draw_circle
    umap['label'] == val, [plotter_widget.plot_x_axis.currentText(), plotter_widget.plot_y_axis.currentText()]]
AttributeError: 'NoneType' object has no attribute 'plot_x_axis'