multiqc / multiqc_sav Goto Github PK

[ERROR  ]         multiqc : Oops! The 'SAV' MultiQC module broke... 
  Please copy the following traceback and report it at https://github.com/ewels/MultiQC/issues 
  If possible, please include a log file that triggers the error - the last file found was:
    /projects/demultiplex/220112_VH00559_4_AAANY2JM5/RunParameters.xml
============================================================
Module SAV raised an exception: Traceback (most recent call last):
  File "/software/bcbio/anaconda/lib/python3.6/site-packages/multiqc_sav/modules/sav.py", line 294, in set_run_info
    parsed_run_date = datetime.strftime(datetime.strptime(run_date, "%y%m%d"), "%d-%m-%Y")
  File "/software/bcbio/anaconda/lib/python3.6/_strptime.py", line 565, in _strptime_datetime
    tt, fraction = _strptime(data_string, format)
  File "/software/bcbio/anaconda/lib/python3.6/_strptime.py", line 365, in _strptime
    data_string[found.end():])
ValueError: unconverted data remains: -01-12T13:49:36Z

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/software/bcbio/anaconda/lib/python3.6/site-packages/multiqc/multiqc.py", line 594, in run
    output = mod()
  File "/software/bcbio/anaconda/lib/python3.6/site-packages/multiqc_sav/modules/sav.py", line 269, in __init__
    self.set_run_info(run_info_xml)
  File "/software/bcbio/anaconda/lib/python3.6/site-packages/multiqc_sav/modules/sav.py", line 296, in set_run_info
    parsed_run_date = datetime.strftime(datetime.strptime(run_date, "%m/%d/%Y %I:%M:%S %p"), "%d-%m-%Y")
  File "/software/bcbio/anaconda/lib/python3.6/_strptime.py", line 565, in _strptime_datetime
    tt, fraction = _strptime(data_string, format)
  File "/software/bcbio/anaconda/lib/python3.6/_strptime.py", line 362, in _strptime
    (data_string, format))
ValueError: time data '2022-01-12T13:49:36Z' does not match format '%m/%d/%Y %I:%M:%S %p'

$ pip install --upgrade --force-reinstall git+https://github.com/MultiQC/MultiQC_SAV.git

Collecting git+https://github.com/MultiQC/MultiQC_SAV.git
  Cloning https://github.com/MultiQC/MultiQC_SAV.git to /tmp/pip-req-build-pbmi1qf6
  Running command git clone --filter=blob:none --quiet https://github.com/MultiQC/MultiQC_SAV.git /tmp/pip-req-build-pbmi1qf6
  Resolved https://github.com/MultiQC/MultiQC_SAV.git to commit 07661ca1dd728f0871cf3f021d1c1ee325a476c2
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Preparing metadata (pyproject.toml) ... done
ERROR: Could not find a version that satisfies the requirement interop>=1.1.23 (from multiqc-sav) (from versions: none)
ERROR: No matching distribution found for interop>=1.1.23

$conda create -n sandbox multiqc multiqc_sav

<skip verbose installation>
Preparing transaction: done
Verifying transaction: done
Executing transaction: done

To activate this environment, use

     $ conda activate sandbox

To deactivate an active environment, use

     $ conda deactivate

$multiqc --view-tags | grep sav

Traceback (most recent call last):
  File "/home/tdayris/anaconda3/envs/sandbox/lib/python3.11/site-packages/multiqc/utils/plugin_hooks.py", line 14, in <module>
    hook_functions[nicename].append(entry_point.load())
    ~~~~~~~~~~~~~~^^^^^^^^^^
KeyError: 'config_loaded'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/tdayris/anaconda3/envs/sandbox/bin/multiqc", line 6, in <module>
    from multiqc.__main__ import run_multiqc
  File "/home/tdayris/anaconda3/envs/sandbox/lib/python3.11/site-packages/multiqc/__init__.py", line 16, in <module>
    from .multiqc import run
  File "/home/tdayris/anaconda3/envs/sandbox/lib/python3.11/site-packages/multiqc/multiqc.py", line 30, in <module>
    from .utils import report, plugin_hooks, megaqc, util_functions, lint_helpers, config, util_functions, log
  File "/home/tdayris/anaconda3/envs/sandbox/lib/python3.11/site-packages/multiqc/utils/plugin_hooks.py", line 16, in <module>
    hook_functions[nicename] = [entry_point.load()]
                                ^^^^^^^^^^^^^^^^^^
  File "/home/tdayris/anaconda3/envs/sandbox/lib/python3.11/site-packages/pkg_resources/__init__.py", line 2470, in load
    self.require(*args, **kwargs)
  File "/home/tdayris/anaconda3/envs/sandbox/lib/python3.11/site-packages/pkg_resources/__init__.py", line 2493, in require
    items = working_set.resolve(reqs, env, installer, extras=self.extras)
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/tdayris/anaconda3/envs/sandbox/lib/python3.11/site-packages/pkg_resources/__init__.py", line 795, in resolve
    raise DistributionNotFound(req, requirers)
pkg_resources.DistributionNotFound: The 'interop>=1.1.23' distribution was not found and is required by the application