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barnard

Barnard's unconditional test for 2x2 contingency tables

biclust

BiCluster Algorithms

boruta

:exclamation: This is a read-only mirror of the CRAN R package repository. Boruta — Wrapper Algorithm for All Relevant Feature Selection. Homepage: https://gitlab.com/mbq/Boruta/ Report bugs for this package: https://gitlab.com/mbq/Boruta/-/issues

boruta-shap

A Tree based feature selection tool which combines both the Boruta feature selection algorithm with shapley values.

c060

computer-science

:mortar_board: Path to a free self-taught education in Computer Science!

conumee

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/conumee.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=conumee.

conumee-2

dna-me-pipeline

DCC/DAC methylation pipeline source

illuminahumanmethylationepicmanifest

Biocondcutor package IlluminaHumanMethylationEPICmanifest based on MethylationEPIC_v-1-0_B4.csv

illuminahumanmethylationepicv2manifest

labs

Scripts for HarvardX courses: PH525x

machine-learning-book

Code Repository for Machine Learning with PyTorch and Scikit-Learn

mcibersort_scripts

scripts used for Grabovska et al methylCIBERSORT analysis

mcpan

Multiple comparisons using normal approximation

mgmtstp27

Automatically exported from code.google.com/p/mgmtstp27

minfi

Devel repository for minfi

ml4calibrated450k

This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estimating class probabilities for personalized cancer diagnostics on DNA methylation microarray data"

mml-book.github.io

Companion webpage to the book "Mathematics For Machine Learning"

monod2

MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data

music

Multi-subject Single Cell Deconvolution

ncvreg

Regularization paths for SCAD- and MCP-penalized regression models

pheatmap

Pretty heatmaps

randomforest

:exclamation: This is a read-only mirror of the CRAN R package repository. randomForest — Breiman and Cutler's Random Forests for Classification and Regression. Homepage: https://www.stat.berkeley.edu/~breiman/RandomForests/

ranger

A Fast Implementation of Random Forests

resume

Resume/CV template using RMarkdown and LaTeX

rfpurify

RF model and functions to estimate tumor purity using methylation data

rtsne

R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding

s4vd

s4vdpca