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Comments (3)

SteffenHeu avatar SteffenHeu commented on August 19, 2024

I put something like that into the utility class during my latest commit. Should probably be renamed to copyFeatureRow to stay consistent, though.

mzmine3/src/main/java/net/sf/mzmine/util/PeakUtils.java

Lines 298 to 326 in b9af700

public static PeakListRow copyPeakRow(final PeakListRow row) {
// Copy the feature list row.
final PeakListRow newRow = new SimplePeakListRow(row.getID());
PeakUtils.copyPeakListRowProperties(row, newRow);
// Copy the peaks.
for (final Feature peak : row.getPeaks()) {
final Feature newPeak = new SimpleFeature(peak);
PeakUtils.copyPeakProperties(peak, newPeak);
newRow.addPeak(peak.getDataFile(), newPeak);
}
return newRow;
}
/**
* Creates a copy of an array of PeakListRows.
* @param rows The rows to be copied.
* @return A copy of rows.
*/
public static PeakListRow[] copyPeakRows(final PeakListRow[] rows) {
PeakListRow[] newRows = new PeakListRow[rows.length];
for(int i = 0; i < newRows.length; i++) {
newRows[i] = copyPeakRow(rows[i]);
}
return newRows;
}

Same for the applied methods to a feature/peak list:

mzmine3/src/main/java/net/sf/mzmine/util/PeakListUtils.java

Lines 12 to 17 in b9af700

public static void copyPeakListAppliedMethods(PeakList source, PeakList target) {
for (PeakListAppliedMethod proc : source.getAppliedMethods()) {
target.addDescriptionOfAppliedTask(proc);
}
}
}

from mzmine3.

SteffenHeu avatar SteffenHeu commented on August 19, 2024

To add to my previous comment:
Maybe create a harmonized addFeatureListToProject method, that creates the applied method by itself.

from mzmine3.

robinschmid avatar robinschmid commented on August 19, 2024

Done.

from mzmine3.

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