n-damo Goto Github PK

gwas_risk

hifre

Open source code to accompany the HiFRe manuscript (link)

holer

Holer exposes local servers behind NATs and firewalls to the public internet over secure tunnels.

icgc-tcga-dream-mutation-calling-challenge-tools

Tools for participants in the ICGC-TCGA DREAM Mutation Calling challenge

inc-seq

INC-Seq: Accurate single molecule reads using nanopore sequencing

intervar

A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

kmer_models

Predictive kmer models for development use

ldpred

longread_umi

macosvpn

:wrench: Create macOS VPNs programmatically

masters-thesis

FER 2016/2017 Masters thesis - "Deep Learning Model for Base Calling of MinION Nanopore Reads"

mockcommunity

Long-read mock community experiments

n-damo.github.io

nanofg

Third-generation fusion gene detection

new-pac

nipt

trisomy of chr13,chr18,chr21 detection within sample,without normal sample as control.

nipter

R Package for Non Invasive Prenatal Testing (NIPT) analysis

no-free_vpn

亲测可用的 VPN。亲测有效的科学上网，同时支持 windows、mac、linux、ios 和 andrioid 系统。并提供 chrome、firefox、opera 等浏览器的插件使用。

osprey

Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.

parasail-python

Python bindings for the parasail C library.

pathongs

Pathogen NGS Documentary

peddy

genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF

porechop

adapter trimmer for Oxford Nanopore reads

primerdesign

Tool to design primers on a vcf file (using primer3 software)

pypore

Tools used to analyze data from nanopore-based experiments.

python3-cookbook

《Python Cookbook》 3rd Edition Translation

r-cmplot

📊 Circular Manhattan Plot

rcacorrect

Scripts for processing and error correction of Nanopore reads generated by rolling circle amplification

rebaler

reference-based long read assemblies of bacterial genomes

rgi

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.