Singularity image for R.
This is still a work in progress.
You can build a local Singularity image named singularity-r.simg with:
sudo singularity build singularity-r.simg SingularityInstead of building it yourself you can download the pre-built image from Singularity Hub with:
singularity pull --name singularity-r.simg shub://nickjer/singularity-rThe R command is launched using the default run command:
singularity run singularity-r.simgor as an explicit app:
singularity run --app R singularity-r.simgExample:
$ singularity run --app R singularity-r.simg --version
R version 3.4.3 (2017-11-30) -- "Kite-Eating Tree"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the
GNU General Public License versions 2 or 3.
For more information about these matters see
http://www.gnu.org/licenses/.The Rscript command is launched as an explicit app:
singularity run --app Rscript singularity-r.simgExample:
$ singularity run --app Rscript singularity-r.simg --version
R scripting front-end version 3.4.3 (2017-11-30)Bug reports and pull requests are welcome on GitHub at https://github.com/nickjer/singularity-r.
The code is available as open source under the terms of the MIT License.
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