nbokulich Goto Github PK

q2-gneiss

QIIME2 plugin for Gneiss

q2-longitudinal

QIIME 2 plugin for paired sample comparisons

q2-makarsa

A QIIME 2 plugin to generate and visualise microbial networks.

q2-metadata

q2-moshpit

MOdular SHotgun metagenome Pipelines with Integrated provenance Tracking

q2-moulinette

q2-phylogenomics

Phylogenomics toolkit and pipelines

q2-quality-control

A QIIME2 plugin for quality control of sequence and feature data

q2-sample-classifier

QIIME2 plugin for machine learning prediction of sample data.

q2-shogun

A QIIME 2 plugin wrapper for the SHOGUN shallow shotgun sequencing taxonomy profiler

q2-stats

q2-taxa

q2-types

Definitions of common QIIME 2 types.

q2-types-genomics

QIIME 2 types for genomics plugins.

q2-vizard

q2studio

Prototype graphical user interface for QIIME 2

qiime2

Official repository for the QIIME 2 framework.

qiime2.github.io

QIIME 2 project front page

readytowear

Ready-made Taxonomic Weights Repository

rescript

REference Sequence annotation and CuRatIon Pipeline

rhapsody

Neural networks for microbe-metabolite interaction analysis

shogun

SHallow shOtGUN profiler

short-read-tax-assignment

A repository for storing code and data related to a systematic comparison of short read taxonomy assignment tools

songbird

Vanilla regression methods for microbiome differential abundance analysis

sysbio_course_2022

tax-credit-code

Microbiome benchmarking code and jupyter notebooks from the tax-credit project

tax-credit-data

raw data from tax-credit project