Comments (3)
@gloriachin: Don't use pip; use poetry to manage dependencies. That said, we'll check if the poetry installation still runs as expected. BTW, what version of the code are you using? The current code doesn't have a pip requirements.txt file, so how are you installing the code base using pip?
I just rechecked the installation of the latest master code using poetry. No dependency conflicts encountered. Code (e.g. unit tests using the system) seem to work fine (except for some unit tests for which code implementation is still a work-in-progress).
Once again: use poetry not pip to manage your dependencies and use the latest release of the software (Release v3.4.15) or the master branch (if you are curious how the code is evolving).
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Not a defect with the code base, but using old copy of the code or not using poetry for dependency management. Closing this issue (unless proven otherwise)
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@gloriachin I revisited the main docs at https://ncatstranslator.github.io/reasoner-validator/ and realized that some of them were slightly out-of-date. I removed spurious mentions of pip except for pypi.org installation, for which I think it is still valid. Otherwise, the recommendation is for poetry installation.
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Related Issues (20)
- Semantic check for error.node.categories_not_array not right? HOT 2
- Is this a bug? HOT 2
- error code with made-up predicate HOT 5
- Review all TRAPI models 'object' contexts for 'nullable: true' directives that allow for missing keys without error HOT 1
- Better to brand 'QNode' context errors with 'QNode' rather than just 'Node' HOT 1
- check_compliance_of_trapi_response() should validate the whole TRAPI Response object, not just the Message part HOT 1
- An empty knowledge graph may be an error in some use cases HOT 1
- New 'recommendations' view needs a new web API endpoint HOT 1
- add descriptions to validation messages in codes.yaml HOT 1
- Add ability to pass a URL or schema dictionary to TRAPISchemaValidator.validate so it can be used to test example data that corresponds to changes in the ReasonerAPI specification on PR. HOT 6
- Deeper validation of TRAPI workflow specifications HOT 1
- Duplication in ValidationReporter messages HOT 1
- crash if workflow is null HOT 1
- crash trying to validate TRAPI response HOT 4
- direction_qualifier errors? HOT 5
- Reasoner Validator yielding incorrect errors for primary_knowledge_source in TRAPI 1.4 HOT 3
- If a TRAPI Attribute is received with "value: None" (or null) this should trigger a validation error HOT 14
- Detect 'dangling nodes/edges' by iterating through node <-> edge mappings) HOT 6
- Issue with dependencies HOT 6
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