Version 3.3.3-pre
For questions regarding SRPRISM, please contact Aleksandr Morgulis ([email protected]) or Richa Agarwala ([email protected])
Download current source code for SRPRISM
$ git clone https://github.com/ncbi/SRPRISM
Do following:
$ cd SRPRISM/srprism
To enable support for NGS library, needed to access NCBI SRA archive directly,
please uncomment the following line in the beginning of the top level Makefile
# export USE_SRA = 1
This will trigger automatic download and compilation of the NGS library.
In order to use pre-installed NGS and VDB libraries, uncomment the following
lines in the top level Makefile and change them to point to the relevant paths
# export NGS_PATH =
# export VDB_PATH =
To build SRPRISM application, do
$ make
After successful build, srprism executable can be found in app/ subdirectory.
Windows 64-bit version of SRPRISM was tested with MS Visual Studio 2022 and
MS Visual Studio 2022 Community Edition. In order to compile the following
is required:
- MS Visual Studio 2022 (or Community Edition of it);
- if cloning from github: git with git bash (available here: https://git-scm.com/download/win)
To compile:
- select a work directory (in the following $SRP_HOME is used as a
full pathname of that directory);
- to clone the latest version: start git bash and issue the following commands:
cd $SRP_HOME
git clone https://github.com/ncbi/SRPRISM
- to use the latest stable release: download the latest .zip archive from
github.com/ncbi/SRPRISM/releases and unpack it in $SRP_HOME
- start MS Visual Studio 2022 and open solution: $SRP_HOME\SRPRISM\windows\SRPRISM\SRPRISM.sln
- select Release/x64 configuration
- in the "Solution Explorer" pane, right click on the solution and select "build solution" in
the context menu
- the final executable SRPRISM.exe will be in $SRP_HOME\SRPRISM\windows\SRPRISM\x64\Release\
Please see srprism/README file for usage infromation and examples.