When: May 17-18, 2022
Where: 5 Bd Henri IV, 34090, Montpellier
- Day 1 (May 17): The symposium
- Day 2 (May 18): The workshop
Click on the map to get directions. There will be signs pointing you to the auditorium.
Due to proliferation of new data generation technologies microbial biology has become a data driven science. Yet there is still a limited "mixing" between researchers studying biological questions and their computational colleagues. The goal of the mini-conference is to bring together representatives of two sides ("wet" and "dry") and discover the ways in which they can be more aware of each other's challenges and priorities. The unique combination of speakers will cover the following areas:
- Analysis of microbial communities
- Experimental evolution
- Phylogenetic reconstruction
- Analysis of recombination
- Analysis of selection
- Data logistics and analysis automation
Stéphanie Bedhomme & Anton Nekrutenko
| Who | When | What |
|---|---|---|
| SB and AN | 9:00 | Inroduction |
| Ellie Harrison (University of Sheffield, UK) | 9:10 | Dynamics and evolution of microbial communities |
| Lois Maignien (Université de Bretagne Occidentale) | 9:45 | Analysis of microbial communities |
| Saskia Hiltemann (Erasmus MC) | 10:05 | Global analytical environment for metagenomic analyses |
| ☕ | 10:25 | 🥐 |
| Stéphanie Bedhomme (CNRS and CEFE) | 11:00 | Evolutionary dynamics of antiobiotic resistance |
| Martijn Callens (Ghent University) | 11:20 | Codon bias and antibiotic resistance |
| Mike Finnegan (CNRS and CEFE) | 11:40 | Experimental evolution |
| Sylvain Gandon (CNRS and CEFE) | 12:00 | Coevolutionary dynamics between phages and CRISPR immunity |
| 🥖 | 12:20 | 🍰 |
| Sergei Kosakovsky Pond (Temple University) | 14:00 | Molecular evolution and selection analysis |
| Guillaume Cambray (CNRS and Centre de Biologie Structurale de Montpellier) | 14:20 | Synthetic biology |
| Sébastien Puechmaille (ISEM) | 14:40 | Genomics of White Nose Disease |
| Wolfgang Maier (University of Freiburg) 14:20 | 15:00 | Large scale analysis of pandemic data |
| Maximilan Haeussler (UC Santa Cruz) | 15:20 | Data analytics and representation |
| Anton Nekrutenko (Penn State University) | 15:40 | Data analysis frameworks for microbial genomics |
| ☕ | 16:00 | 🥐 |
The workshop will focus on the application of sequencing data (Illumina, Oxford Nanopore, PacBio) to analysis of microbial communities, genome assembly, analysis of variation, and identification of sites under selection. It will be presented by:
- Saskia Hiltemann - Erasmus MC, Netherlands
- Helena Rasche - Erasmus MC & Avans Hogeschool, Netherlands
- Anton Nekrutenko - Penn State
- Wolfgang Maier - University of Freiburg
Workshop will consist of two parts interrupted by a lunch break:
- Part 1: 9:00 - 12:00
- Part 2: 13:30 - 16:00
- MAK'IT (MAK'IT announcement)
- CEFE/CNRS
- NIH/NSF
5 Bd Henri IV, 34090, Montpellier
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