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NeuroDebian is a popular turnkey platform for Neuroscience, where software is integrated, tested, and delivered conveniently and reliably so you could concentrate on your research and not on "system maintenance". It provides a large collection of popular neuroscience research software for the Debian operating system as well as Ubuntu and other derivatives. Please visit our main website to discover more.

Travis tests status Docker https://www.singularity-hub.org/static/img/hosted-singularity--hub-%23e32929.svg

Related projects from the NeuroDebian authors

  • Open Brain Consent - samples and an ultimate wording for experiment participant consent forms to make open data sharing possible
  • DataLad - a data distribution and management platform, which addresses shortcomings of solutions of software/code-oriented solutions (such as NeuroDebian and pure git), when applied to data
  • ReproIn - a turnkey solution for collecting MRI data directly as BIDS DataLad datasets
  • DueCredit - Automated collection and reporting of citations for used software/methods/datasets
  • Study Forrest - a diverse and ever-expanding collection of data and studies on our favorite shrimping, cross-country running, international ping-pong champion: Forrest Gump
  • PyMVPA - a machine learning framework for the analysis of (not only) neuroimaging data
  • Discover more about these and other projects from Center for Open Neuroscience and Psychoinformatics.

NeuroDebian's Projects

pycortex icon pycortex

Pycortex is a python-based toolkit for surface visualization in fMRI data

pydicom icon pydicom

Read, modify and write DICOM files with python code

pylocator icon pylocator

Localization of EEG-electrodes from MRI-recordings

pymc icon pymc

Bayesian inference in Python

pymeg icon pymeg

Python NeuroImaging software

pyqtgraph icon pyqtgraph

Please note: pyqtgraph is currently hosted at launchpad.net/pyqtgraph (although it might move here later).

pyspace icon pyspace

Signal Processing And Classification Environment in Python

python-neo icon python-neo

Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats

pyxid icon pyxid

Pure python library for communicating with Cedrus XID devices

seaborn icon seaborn

Statistical data visualization using matplotlib

smile icon smile

State Machine Interface Library for Experiments

spm12 icon spm12

NeuroDebian packaging of SPM12 (official repo at https://github.com/spm)

spm8 icon spm8

NeuroDebian packaging of SPM8 (official repo at https://github.com/spm)

spykeutils icon spykeutils

pykeutils is a Python library for analyzing and plotting data from neurophysiological recordings

spykeviewer icon spykeviewer

Spyke Viewer is a multi-platform GUI application for navigating, analyzing and visualizing electrophysiological datasets.

stackbrew icon stackbrew

docker-brew is a command-line tool used to build the docker standard library.

statsmodels icon statsmodels

Statsmodels: statistical modeling and econometrics in Python

summerschool icon summerschool

Proposal for a summer school in reproducible research in Python, Summer 2012

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