Giter VIP home page Giter VIP logo

fsl's Introduction

                              ==  ===============   === =
                       =  ================================
                  = ======= =        =  ==      ==============
                ======                             = ============ = =
            ====== =                                  = ============ =
        = =======                                        = ============
      ===========                                             ==========
      ===== =                                                 = ==========
   ===== =                                                        ========
  ======                                                            ======
 =====                                           =                  =======
 ====                                            =                    ======
 ====                        ==   ==  =  == = ==                      ======
=====                  = ======== =  ==   =                            ======
====              =  =====  ==                                         ======
===               ===== =                                               ======
===               ===                                                 =======
  =            = ==                                                 = ========
  =  =        =====                                             =============
             =  ==                                        ==  =============
             == ===                                 =   ================ =
               =====                          == ================== ==
              ==  ==== =                 =  ============ = ===  =
                   = ===== ===   ==  =============   == = =
                      = ====================   ==

NeuroDebian is a popular turnkey platform for Neuroscience, where software is integrated, tested, and delivered conveniently and reliably so you could concentrate on your research and not on "system maintenance". It provides a large collection of popular neuroscience research software for the Debian operating system as well as Ubuntu and other derivatives. Please visit our main website to discover more.

Travis tests status Docker https://www.singularity-hub.org/static/img/hosted-singularity--hub-%23e32929.svg

Related projects from the NeuroDebian authors

  • Open Brain Consent - samples and an ultimate wording for experiment participant consent forms to make open data sharing possible
  • DataLad - a data distribution and management platform, which addresses shortcomings of solutions of software/code-oriented solutions (such as NeuroDebian and pure git), when applied to data
  • ReproIn - a turnkey solution for collecting MRI data directly as BIDS DataLad datasets
  • DueCredit - Automated collection and reporting of citations for used software/methods/datasets
  • Study Forrest - a diverse and ever-expanding collection of data and studies on our favorite shrimping, cross-country running, international ping-pong champion: Forrest Gump
  • PyMVPA - a machine learning framework for the analysis of (not only) neuroimaging data
  • Discover more about these and other projects from Center for Open Neuroscience and Psychoinformatics.

fsl's People

Contributors

aqw avatar mawebster avatar mih avatar tillea avatar yarikoptic avatar

Watchers

avatar avatar avatar avatar

Forkers

nagyistge knutj haozx2014 shahzadlone

fsl's Issues

FTBFS on 17.04

ref: http://neuro.debian.net/#comment-3348248016
reply followed (which can't find a link online):

Thanks for the link, but actually, I did not have to do anything to get FSL to compile under 17.04 with GCC-6.3.0 using your repository.
The only thing I needed to do is copy over some of the header files and libraries (such as niftiio, lixml++, etc.) which I originally built from the fsl-5.0.10-sources.tar.gz archive downloaded on your website.

What I needed to do in order to get the code from the archive to compile was (apart from following the instructions on https://fsl.fmrib.ox.ac.uk/...
- since I'm compiling with GCC6 (https://gcc.gnu.org/gcc-6/p..., I needed to edit two files in extras/src/libxml++-2.34.0/libxml++/io
+ istreamparserinputbuffer.cc: replace one occurrence of "return input_"; by "return static_cast<bool>(input_);"
+ ostreamoutputbuffer.cc: replace two occurrence of "return output_"; by "return static_cast<bool>(output_);"
- add a gnu_64-gcc6.3 configuration (copied from linux_64-gcc4.8)
+ edit systemvars.mk to remove all occurrences of "scl enable devtoolset-2 --"
+ edit externallibs.mk to match the version of vtk I installed with "apt-get install libvtk6-dev" (6.3 in my case)
- add "-ldl" at the end of LDLIBS in src/mist-clean/Makefile
- add "-lm" at the end of LDLIBS in src/miscvis/Makefile
- delete all but the first line in src/FastPDlib/depend.mk
- delete all but the first line in src/newmesh/depend.mk

The last two could probably be alleviated by deleting all depend.mk in the archive file.

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.