Run "python main.py <data_file.nii>"
For development purpose, intermediary is saved in testData/.
Structure
src/ 2Dlabelling/ 3Dlabelling/ corners/ meshing/ threshold/
2DlabellingTest.py
3DlabellingTest.py
cornersTest.py
labellingTest.py
meshingTest.py
thresholdTest.py
testData/
main.py README.md
Input: threshold : <data_file>.nii.gz 2Dlabelling : <data_file>_threshold.nii.gz 3Dlabelling : <data_file>_2dlabelling.nii.gz corners : <data_file>_3dlabelling.nii.gz meshing : <data_file>_corners.nii.gz
Output meshing (and main) : <data_file>.mesh