Comments (2)
d4straub
commented on May 23, 2024
Hi,
I agree that would be a desirable addition.
Guidelines for q2-quality-control describe a workflow for positive controls here.
Negative controls might be even more important and covered by decontam.
I have to admit that's not my highest priority, if you would like to have it done soonish, you might want to contribute.
Best wishes
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d4straub
commented on May 23, 2024
I won't have time for this in the foreseeable future, but it remains interesting. If anyone wants to do a pull request for that I would be happy to test it.
Closed for now.
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Related Issues (20)
- nf-core/ampliseq with conda - change bioconductor-biostrings HOT 2
- Launch webpage not working HOT 4
- Adding qza file for downstream analysis in R HOT 3
- When using `--vsearch_cluster`, if you have many thousands of clusters, `AMPLISEQ:FILTER_CLUSTERS` will fail with an `Argument list too long` error. HOT 8
- test_full Cannot access file fastq HOT 1
- Multipe region amplicon sequencing analysis support (5R / SMURF / q2-sidle) HOT 1
- Getting ca 50% more ASVs than when using DADA2 on QIIME2 HOT 2
- ampliseq fails during taxonomy assignation when processing ITS sequences HOT 14
- Error No subject alternative DNS name matching zenodo.org found HOT 2
- minor improvement of sort() before denoising with method = "radix HOT 2
- 12S taxonomic classification databases HOT 3
- Does the `gtdb` database only include Bacteria? HOT 5
- Remove PhytoRef as it's included in PR2 5.0.0 HOT 1
- Template update 2.13.1 HOT 1
- Barrnap filtration HOT 4
- ERROR ~ Error executing process > 'NFCORE_AMPLISEQ:AMPLISEQ:DADA2_MERGE .........has been broken HOT 3
- ANCOM-BC for differentially abundant taxa HOT 1
- ERROR: R_HOME ('/usr/local/lib/R') not found HOT 4
- Misleading error message when samples are not passing filterandtrim
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