Comments (2)
Hi there,
the pipeline cannot execute QIIME2 with conda.
You should have gotten at least one big warning saying
"QIIME2 does not support Conda. Please use Docker / Singularity / Podman instead."
did you not?
It is also discouraged to use conda, see https://nf-co.re/ampliseq/2.9.0/docs/usage#-profile
Other than that, maybe it would be good to add that warning somewhere in the documentation. Where would you have seen it?
from ampliseq.
oh! Thank you very much!!!
from ampliseq.
Related Issues (20)
- 12S taxonomic classification databases HOT 3
- Does the `gtdb` database only include Bacteria? HOT 5
- Remove PhytoRef as it's included in PR2 5.0.0 HOT 1
- Template update 2.13.1 HOT 1
- Barrnap filtration HOT 4
- ERROR ~ Error executing process > 'NFCORE_AMPLISEQ:AMPLISEQ:DADA2_MERGE .........has been broken HOT 3
- ANCOM-BC for differentially abundant taxa HOT 1
- ERROR: R_HOME ('/usr/local/lib/R') not found HOT 5
- Misleading error message when samples are not passing filterandtrim HOT 1
- Accessing 16S gene identifiers HOT 13
- DADA2 split regions singularity HOT 13
- multi-region analysis: sidle/reconstructed/reconstructed_merged.tsv OCCATIONALLY mis-formatted HOT 1
- Running test error HOT 1
- Abundance plots for qiime2 results without metadata provided HOT 3
- Adding ONT read support for ampliseq HOT 2
- `overall_summary.tsv` sometimes with misleading numbers in 2.9.0 HOT 11
- Analyse data set that contains unknown primer set HOT 5
- Cutadapt with "-u" instead of "fw/rv_primer seq" HOT 1
- Misleading text in output documentation HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from ampliseq.