Comments (2)
drpatelh
commented on September 24, 2024
Thanks for reporting @wutron ! Fancy creating a PR with a fix for this issue and #369 ? Your timing is great because I am planning to release tomorrow.
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drpatelh
commented on September 24, 2024
Fixed in #370
Invited you to become a member of the nf-core Github org too. Thanks for providing the fix! Fancy reviewing and approving the PR? You will be able to test dev once that PR is merged to confirm everything is ok.
nextflow pull nf-core/viralrecon -r dev
nextflow run nf-core/viralrecon <YOUR_PARAMETERS> -r dev
from viralrecon.
Related Issues (20)
- ERROR ~ Error executing process > 'NFCORE_VIRALRECON:NANOPORE:ARTIC_MINION' HOT 1
- [bug] Fails to find FASTQ files when stored on S3
- epi2me-labs/wf-cnv failed during analysis HOT 7
- Allow viralrecon to take gtf as input annotation file
- primer_set is not taking param
- Artic v5 mismatched primer names in artic-ncov2019 repo cause certain amplicons to be erroneously filtered/removed
- Add QIAseq DIRECT SARS-CoV-2 Kit amplicons
- Argument input-fasta is missing in NFCORE_VIRALRECON:ILLUMINA:CONSENSUS_BCFTOOLS:CONSENSUS_QC:NEXTCLADE_RUN" HOT 4
- Problem installing viralrecon
- Adding "aggregate" and "plot" methods in the freyja subworkflow HOT 4
- Error running version 2.6.0 with Nanopore data in process NFCORE_VIRALRECON:NANOPORE:ARTIC_MINION
- Unable to download the python script HOT 3
- Split authors in generated RO crate
- Adding "--grouplineages" parameter in the nf-core/viralrecon HOT 3
- Make cutadapt primer's position ext.arg
- Properly deal with multiqc in the config files before the next release HOT 3
- Temp file problem in VARIANTS_IVAR:BCFTOOLS_SORT HOT 1
- Allow skipping `freyja boot` HOT 1
- `MOSDEPTH_AMPLICON` doesn't run in `dev` branch HOT 1
- Non-SCV2 amplicon run returns consensus genomes with no low-coverage masking HOT 5
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