RESTful web API implementation to interact with Comparative Sequencing Analysis Platform.

Disclamier: This software is in constant development and NOT READY TO BE USED IN PRODUCTION.

As a first step, you need to have Docker and Docker Compose set up. While running the server without Docker might be technically possible, it may require modifications to the source code and is not recommended.

git clone https://github.com/MBaysanLab/cosap-webapi.git
cd cosap-webapi

If you don't want to set the environment variables in the host environment, you can just replace the environment variables with their values in the docker-compose.yaml file.

docker compose up -d

This command will build the container image and run the containers in detached mode. If you are building the image for the first time, it might take some time as it requires around 1GB of packages to be downloaded.

You might also need to update the database structure after the containers are started:

docker compose exec web bash -l -c "python manage.py makemigrations && python manage.py migrate"

You can view the logs with:

docker compose logs -f -t

You can stop and remove the containers with:

docker compose down