ntjames / bayescpm Goto Github PK
View Code? Open in Web Editor NEWModel continuous and mixed outcomes using Bayesian Cumulative Probability Models
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karthy257bayescpm's Issues
How to specify link function
Nathan how do you specify the link function?
In the example the link was not specified and the comment says the probit link is being used. Is that correct?
On an unrelated note:
- How do you suppress the sampling messages?
- How do you save the compiled stan object for re-use with bayes_cpm?
- Think about adding this to the example:
options(mc.cores = parallel::detectCores())
# To avoid recompilation of unchanged Stan programs:
rstan::rstan_options(auto_write = TRUE)
w <- fit_cdf
ggplot(w, aes(x=yval, y=med_cdf, color=as.factor(x1))) + geom_step() +
geom_ribbon(aes(ymin=cdf_q10, ymax=cdf_q90), linetype=0, alpha=0.2) +
guides(color=guide_legend(title='x1')) +
xlab('y') + ylab('Posterior Median CDF')
# Would be nice if could specify step functions for geom_ribbon
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