• Notes from Mindy (everyone)
• Update in SPS data file (Mari)
• Update csv files from SPS data (Eli)
• Double-check that everything is updated and no blank entries

Not sure what the files in there are. Don't think they are needed.

• Add compiler

• Download SPS
• Read in xls and divide into files
• Write code to read in file, change columns to standard
• write csv to data-raw in branch

Who: Data team + Eli

• All contributor and citation entries complete
• All source notes entered
• Archive raw data files and csv files
• Data entered into SPS

Data compilers to package

• Add Viability Report citation
• Add download to Rd files
• Update installation to release not main
• Clean up the pkgdown site when rebuilding. Keeps just adding on stuff. Add to GH Action. Don't use pkgdown::clean_site(pkg = ".") because I need data dir and can't create wo pkgdown complaining.

Last step

• S2.1 Add download raw data button to the data man files
• S2.3 Clean-up the Rd output

See issue in SR2020 repo

• Create the 2020data branch with current VRData code.
• Build the pkgdown site
• Check for problems
• If problems, fix code in code branch. Pull into 2020data branch.
• Check that code branch still builds pkgdown aok.

Compiled by: instead of author

Contributor:
WA Department of F & W

Citation:
available at https://fortress.wa.gov/dfw/score/score/; http://odfwrecoverytracker.org/metadata/; https://www.monitoringmethods.org

East Fork South Fork Salmon River summer Chinook, Secesh River summer Chinook, and Snake River Lower Mainstem fall Chinook Natural Origin Spawner Abundance Dataset (1949-2018). Spawner abundance data.

Nez Perce Tribe. Protocol and methods available at https://www.cbfish.org/Document.mvc/Viewer/P165414; https://www.cbfish.org/Document.mvc/Viewer/P164600. Personal communication with Mari Williams, NOAAF NWFSC/OAI Dec 2019.

Description (what is this a data set of)
contributor,
Citation
methods,
download date
data source(s)
compiler,

Format add info if number
ESU/DPS (constrained field)
Fracwild (decimal number between 0 and 1).
Year. Integer. See details for ESU/DPS comments.
NUMBER_OF_SPAWNERS Total spawners or escapement.

Reports

spawners on same plot
y-scaling

After has been pushed up review. DOI

Items to fix

• Line 6312-6515 is all blank for spawners, fracwild and catch. Probably good to put -99 there to make clear that these are years with missing data not a mistake.

• Same with lines 5778-5792

• The FRACWILD column still has some blanks (besides those above). That has tripped us up in the past since these are interpreted as -99. Might be good to make them -99 to be clear that they are.

• The ESU column has 3 ESUs that don't follow the format of all the others: Hood Canal, Ozette Lake Sockeye Salmon ESU, Puget Sound. All the other ESUs look something like "Steelhead (Puget Sound DPS)"

• The RUN_TIMING column has a variety of formats. e.g. Su, Summer, and SumR. Wi, Winter and WR.

• NUMBER_OF_SPAWNERS column has blanks. Those should be -99 to be clear that they are missing.

• SPECIES has both Chinook and Chinook salmon

• Are we using BROOD_YEAR as the year column? I thought we switched to YEAR.

• Are we using START and END columns? Mostly they are blank. If we are, note that some of the END values are different, e.g. 1968-2019 instead of 2019.

• Contact Emily re example.

• #27

• Create structure
• Add 2020 data to 2020data branch
• Do the data clean up
• Clean up the branch

• Write wiki pages
• Contact Mari and Katie feedback
• Incorporate feedback into wiki

2020 Data Visualization

Release 2.3

• #12
• #21

Release 2.4

• #22
• #35

Release 2.X

Need to decide if this is part of VRData or not

• E5 Include summary table with output
• E6 Create a basic shiny app (dashboard) that visualizes bigtable [optional]
• E7 Google Drive integration

Figure how to have changes post to a branch or something for review before merging.

Right now super long

As a member of the Pacific NW Aquatic Monitoring Working Group or contributor to Coordinated Assessments
I want to be able to look up and download the raw data and sources for populations in the 2020 SR
so that I can see where the data came from including the CAX sources, so I can compare the raw counts to my own data on those, and so I can see where there are gaps.

This requires: Get the pentultimate VR 2020 data that went to SPS into the GitHub R package (pkgdown) and fix problems that arose when Mari made all the columns uniform across the ESUs.

• #13
• #14
• #15
  • that way I can test code against old data (backwards compatible) and against new data
• #16
• #17
• #18
• #23
• #26
• S1.8 Push changes to main and delete branches
• S1 new story

Using https://github.com/RVerse-Tutorials/GoogleDrive1 example, code a script to

• Check Google Drive folder for changes
• Download the changed files and add to data folder
• Commit to GitHub

here's what

Group populations together that share the same citation and source.

Probably want the index.md and readme to be the same

Compiled by: instead of author

Contributor:
WA Department of F & W

Citation:
available at https://fortress.wa.gov/dfw/score/score/; http://odfwrecoverytracker.org/metadata/; https://www.monitoringmethods.org

East Fork South Fork Salmon River summer Chinook, Secesh River summer Chinook, and Snake River Lower Mainstem fall Chinook Natural Origin Spawner Abundance Dataset (1949-2018). Spawner abundance data.

Nez Perce Tribe. Protocol and methods available at https://www.cbfish.org/Document.mvc/Viewer/P165414; https://www.cbfish.org/Document.mvc/Viewer/P164600. Personal communication with Mari Williams, NOAAF NWFSC/OAI Dec 2019.

Description (what is this a data set of)
contributor,
Citation
methods,
download date
data source(s)
compiler,

Format add info if number
ESU/DPS (constrained field)
Fracwild (decimal number between 0 and 1).
Year. Integer. See details for ESU/DPS comments.
NUMBER_OF_SPAWNERS Total spawners or escapement.

• #29
• #33
• #28
• #11
• #1
• #34
• #24