Some info.
nwfsc-math-bio / vrdata Goto Github PK
View Code? Open in Web Editor NEWSpawner and fraction wild data for the NWFSC Status Reviews.
Home Page: https://nwfsc-math-bio.github.io/VRData/
License: Other
Spawner and fraction wild data for the NWFSC Status Reviews.
Home Page: https://nwfsc-math-bio.github.io/VRData/
License: Other
Not sure what the files in there are. Don't think they are needed.
data-raw
in branchWho: Data team + Eli
Data compilers to package
pkgdown::clean_site(pkg = ".")
because I need data
dir and can't create wo pkgdown complaining.Last step
See issue in SR2020 repo
Compiled by: instead of author
Contributor:
WA Department of F & W
Citation:
available at https://fortress.wa.gov/dfw/score/score/; http://odfwrecoverytracker.org/metadata/; https://www.monitoringmethods.org
East Fork South Fork Salmon River summer Chinook, Secesh River summer Chinook, and Snake River Lower Mainstem fall Chinook Natural Origin Spawner Abundance Dataset (1949-2018). Spawner abundance data.
Nez Perce Tribe. Protocol and methods available at https://www.cbfish.org/Document.mvc/Viewer/P165414; https://www.cbfish.org/Document.mvc/Viewer/P164600. Personal communication with Mari Williams, NOAAF NWFSC/OAI Dec 2019.
Description (what is this a data set of)
contributor,
Citation
methods,
download date
data source(s)
compiler,
Format add info if number
ESU/DPS (constrained field)
Fracwild (decimal number between 0 and 1).
Year. Integer. See details for ESU/DPS comments.
NUMBER_OF_SPAWNERS Total spawners or escapement.
Reports
spawners on same plot
y-scaling
Items to fix
Line 6312-6515 is all blank for spawners, fracwild and catch. Probably good to put -99 there to make clear that these are years with missing data not a mistake.
Same with lines 5778-5792
The FRACWILD column still has some blanks (besides those above). That has tripped us up in the past since these are interpreted as -99. Might be good to make them -99 to be clear that they are.
The ESU column has 3 ESUs that don't follow the format of all the others: Hood Canal, Ozette Lake Sockeye Salmon ESU, Puget Sound. All the other ESUs look something like "Steelhead (Puget Sound DPS)"
The RUN_TIMING column has a variety of formats. e.g. Su, Summer, and SumR. Wi, Winter and WR.
NUMBER_OF_SPAWNERS column has blanks. Those should be -99 to be clear that they are missing.
SPECIES has both Chinook and Chinook salmon
Are we using BROOD_YEAR as the year column? I thought we switched to YEAR.
Are we using START and END columns? Mostly they are blank. If we are, note that some of the END values are different, e.g. 1968-2019 instead of 2019.
Figure how to have changes post to a branch or something for review before merging.
Right now super long
As a member of the Pacific NW Aquatic Monitoring Working Group or contributor to Coordinated Assessments
I want to be able to look up and download the raw data and sources for populations in the 2020 SR
so that I can see where the data came from including the CAX sources, so I can compare the raw counts to my own data on those, and so I can see where there are gaps.
This requires: Get the pentultimate VR 2020 data that went to SPS into the GitHub R package (pkgdown) and fix problems that arose when Mari made all the columns uniform across the ESUs.
Using https://github.com/RVerse-Tutorials/GoogleDrive1 example, code a script to
here's what
Group populations together that share the same citation and source.
Probably want the index.md and readme to be the same
Compiled by: instead of author
Contributor:
WA Department of F & W
Citation:
available at https://fortress.wa.gov/dfw/score/score/; http://odfwrecoverytracker.org/metadata/; https://www.monitoringmethods.org
East Fork South Fork Salmon River summer Chinook, Secesh River summer Chinook, and Snake River Lower Mainstem fall Chinook Natural Origin Spawner Abundance Dataset (1949-2018). Spawner abundance data.
Nez Perce Tribe. Protocol and methods available at https://www.cbfish.org/Document.mvc/Viewer/P165414; https://www.cbfish.org/Document.mvc/Viewer/P164600. Personal communication with Mari Williams, NOAAF NWFSC/OAI Dec 2019.
Description (what is this a data set of)
contributor,
Citation
methods,
download date
data source(s)
compiler,
Format add info if number
ESU/DPS (constrained field)
Fracwild (decimal number between 0 and 1).
Year. Integer. See details for ESU/DPS comments.
NUMBER_OF_SPAWNERS Total spawners or escapement.
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