ocxtal Goto Github PK
Name: Hajime Suzuki
Type: User
Twitter: ocxtal
Hajime Suzuki's Projects
act-local-cache-server
save GitHub Actions artifacts and caches in your local
adaptivebandbench
Benchmark on adaptive banded algorithm
alignqc
Generate a report on sequencing alignments to understand read alignments vs read sizes, error patterns in reads, annotations and rarefractions.
bench.h
benchmarking utility for C99 codes
bioconda-recipes
Conda recipes for the bioconda channel.
box.py
box outline generator for laser cutters
bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
canu
A single molecule sequence assembler for genomes large and small.
chalk
colorscheme collection for TextMate (Sublime Text), vim and pygments.
clock
clock on terminal
comb
comb aligner -- a graphical nucleotide sequence alignment tool
curve
Vector drawing library
cvec
utils to handle char vectors
diffbench
Benchmark on difference algorithm
dozeu
SIMD-parallel BLAST X-drop DP on sequence graphs
exec-commands
scan markdown files and execute `console` blocks
ge
grep and edit git-tracked files in bulk
gpa
Graphical Pairwise Alignment format specification
graphmap
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html
homebrew
:beer: The missing package manager for OS X.
homebrew-science
:microscope: Scientific formulae for the Homebrew package manager
insn_bench_aarch64
Instruction latency & throughput profiler for AArch64
kvec.h
fork of kvec.h in https://github.com/attractivechaos/klib
ledblinker
LED blinker module on PSoC3 / 5
libaw
alignment writer
libbigwig
A C library for handling bigWig files
libfna
FASTA / FASTQ parser in pure C99
libftio
Synchronous bit-bang I/O on FTDI devices
libgaba
Adaptive semi-global banded alignment on string graphs
libggsea
Graph-to-Graph Seed-and-Extend Alignment
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