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Hi, I have tried to use SSOAP function to do the analysis for http://impala.molgen.mpg.de/wsdoc.
But it failed. Could you please give me an example code to do the analysis for this website.

Best regards!
Bo

See http://www.kegg.jp/kegg/rest/

This makes the KEGG examples not work.

I have recently tried to use your package SSOAP to access the BRENDA SOAP API from R, which provides a WSDL file. Initially, I tried to process it with processWSDL():

w = processWSDL("http://www.brenda-enzymes.org/soap/brenda.wsdl", verbose=T)

1 ) ArrayOfIntegers ( complexType )
2 ) ArrayOfStrings ( complexType )
3 ) elementaryReference ( complexType )
4 ) reference ( complexType )
5 ) ArrayOfReferences ( complexType )
6 ) sequence ( complexType )
7 ) ArrayOfSequences ( complexType )
8 ) kmValue ( complexType )
9 ) ArrayOfKmvalues ( complexType )
10 ) phStability ( complexType )
11 ) ArrayOfPhstabilitys ( complexType )
12 ) oxidationStability ( complexType )
13 ) ArrayOfOxidationstabilitys ( complexType )
14 ) naturalSubstratesProducts ( complexType )
15 ) ArrayOfNaturalsubstratesproductss ( complexType )
16 ) engineering ( complexType )
17 ) ArrayOfEngineerings ( complexType )
18 ) naturalProduct ( complexType )
19 ) ArrayOfNaturalproducts ( complexType )
20 ) metalsIons ( complexType )
21 ) ArrayOfMetalsionss ( complexType )
22 ) activatingCompound ( complexType )
23 ) ArrayOfActivatingcompounds ( complexType )
24 ) inhibitors ( complexType )
25 ) ArrayOfInhibitorss ( complexType )
26 ) cofactor ( complexType )
27 ) ArrayOfCofactors ( complexType )
28 ) generalStability ( complexType )
29 ) ArrayOfGeneralstabilitys ( complexType )
30 ) naturalSubstrate ( complexType )
31 ) ArrayOfNaturalsubstrates ( complexType )
32 ) molecularWeight ( complexType )
33 ) ArrayOfMolecularweights ( complexType )
34 ) crystallization ( complexType )
35 ) ArrayOfCrystallizations ( complexType )
36 ) substratesProducts ( complexType )
37 ) ArrayOfSubstratesproductss ( complexType )
38 ) reactionType ( complexType )
39 ) ArrayOfReactiontypes ( complexType )
40 ) organismSynonyms ( complexType )
41 ) ArrayOfOrganismsynonymss ( complexType )
42 ) enzymeNames ( complexType )
43 ) ArrayOfEnzymenamess ( complexType )
44 ) organicSolventStability ( complexType )
45 ) ArrayOfOrganicsolventstabilitys ( complexType )
46 ) application ( complexType )
47 ) ArrayOfApplications ( complexType )
48 ) synonyms ( complexType )
49 ) ArrayOfSynonymss ( complexType )
50 ) temperatureOptimum ( complexType )
51 ) ArrayOfTemperatureoptimums ( complexType )
52 ) temperatureStability ( complexType )
53 ) ArrayOfTemperaturestabilitys ( complexType )
54 ) piValue ( complexType )
55 ) ArrayOfPivalues ( complexType )
56 ) temperatureRange ( complexType )
57 ) ArrayOfTemperatureranges ( complexType )
58 ) recommendedName ( complexType )
59 ) ArrayOfRecommendednames ( complexType )
60 ) product ( complexType )
61 ) ArrayOfProducts ( complexType )
62 ) casRegistryNumber ( complexType )
63 ) ArrayOfCasregistrynumbers ( complexType )
64 ) localization ( complexType )
65 ) ArrayOfLocalizations ( complexType )
66 ) posttranslationalModification ( complexType )
67 ) ArrayOfPosttranslationalmodifications ( complexType )
68 ) systematicName ( complexType )
69 ) ArrayOfSystematicnames ( complexType )
70 ) cloned ( complexType )
71 ) ArrayOfCloneds ( complexType )
72 ) specificActivity ( complexType )
73 ) ArrayOfSpecificactivitys ( complexType )
74 ) subunits ( complexType )
75 ) ArrayOfSubunitss ( complexType )
76 ) ligands ( complexType )
77 ) ArrayOfLigandss ( complexType )
78 ) turnoverNumber ( complexType )
79 ) ArrayOfTurnovernumbers ( complexType )
80 ) ecNumber ( complexType )
81 ) ArrayOfEcnumbers ( complexType )
82 ) reaction ( complexType )
83 ) ArrayOfReactions ( complexType )
84 ) sourceTissue ( complexType )
85 ) ArrayOfSourcetissues ( complexType )
86 ) substrate ( complexType )
87 ) ArrayOfSubstrates ( complexType )
88 ) phRange ( complexType )
89 ) ArrayOfPhranges ( complexType )
90 ) storageStability ( complexType )
91 ) ArrayOfStoragestabilitys ( complexType )
92 ) phOptimum ( complexType )
93 ) ArrayOfPhoptimums ( complexType )
94 ) disease ( complexType )
95 ) ArrayOfDiseases ( complexType )
96 ) purification ( complexType )
97 ) ArrayOfPurifications ( complexType )
98 ) renatured ( complexType )
99 ) ArrayOfRenatureds ( complexType )
100 ) kiValue ( complexType )
101 ) ArrayOfKivalues ( complexType )
102 ) Pathway ( complexType )
103 ) ArrayOfpathways ( complexType )
104 ) organism ( complexType )
105 ) ArrayOfOrganisms ( complexType )
106 ) pdb ( complexType )
107 ) ArrayOfPdbs ( complexType )
Error in x$id : object of type 'S4' is not subsettable

The types seem to be processed correctly, but then it stops with the error shown above. After doing some research, as I am using R version 3.3.1, could this be related to the change in R S4 classes after R 2.4.0?

Have you had any experience with SSOAP in latter versions of R?

Any advice would be greatly appreciated

I'm having some difficulty using this package to access the ChemSpell SOAP service with the SSOAP package.

When I try to process the WSDL, I get the following error:

> processWSDL("http://chemspell.nlm.nih.gov/axis/SpellAid.jws?wsdl")
Error in UseMethod("xmlAttrs", node) : 
   no applicable method for 'xmlAttrs' applied to an object of class "NULL"

From this point, I started down the rabbit hole and can't seem to find my way out. I had a look at the processWSDL function and tried to step through it and got even more errors. I was hoping to manually get myself to a SOAPServerDescription. It looks like at some point XMLSchema was split off from the main package and maybe there are some naming inconsistencies?

I fully understand that SOAP is not really a hot topic these days, but does anyone have any hints or links that could point me in the right direction here? The ChemSpell service seems really straightforward, I just haven't quite figured out how to brute force a SOAP message to it.

For our taxize I tried to interact with the WoRMS webservice.
However I can't get their example to run:

> library(SSOAP)
> 
> w = processWSDL("http://www.marinespecies.org/aphia.php?p=soap&wsdl=1")
> iface = genSOAPClientInterface(, w)
Error: evaluation nested too deeply: infinite recursion / options(expressions=)?
Error during wrapup: evaluation nested too deeply: infinite recursion / options(expressions=)?
> sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8    LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C             LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] SSOAP_0.9-1

loaded via a namespace (and not attached):
[1] codetools_0.2-8 RCurl_1.95-4.1  tools_3.0.2     XML_3.98-1.1    XMLSchema_0.7-2

Any Ideas?

The problem comes actually from XMLSchema:::defineClasses() and there probably the two nested lapply() (?).

Hi,

I have been using the package to work with WSDL's but after our service provider switched to TLS v1.2 I am getting the below error:

Error in function (type, msg, asError = TRUE) :
Unknown SSL protocol error in connection to ...:443

Any hint on how to workaround this? -- I can fix this and make a pull request if given some high-level advice.

Thanks