openminted / alvis-docker Goto Github PK
View Code? Open in Web Editor NEWDockerizing Alvis and its components
Dockerizing Alvis and its components
tar xvf ... returns
gzip: stdin: not in gzip format
tar: Child returned status 1
tar: Error is not recoverable: exiting now
Make it the components compatible with the guidelines https://guidelines.openminted.eu/guidelines_for_providers_of_sw_resources/how-to-make-your-components-interoperable.html
Can you please update bibliome/alvisengine on Dockerhub?
Thanks!
There here: https://github.com/openminted/alvis-docker/tree/master/openminted-components/segmenter/test-data/plans
OMTD_GeniaTagger.plan
: segmentation, POS-tagging, lemmatization, NER (DNA, cell_line, cell_type, PROTEIN).OMTD_RDFProjector.plan
and its resource Wheat-Trait-Ontology-1.2.xrdf
: segmentation, POS-tagging, lemmatization, NER (phenotype). Wherever the resource is located, the path should be set right at line 15.OMTD_ToMap.plan
and its resource OntoBiotope_BioNLP-ST-2016-Habitat.tomap
: segmentation, POS-tagging, lemmatization, NER (habitat). Wherever the resource is located, the path should be set at line 19.OMTD_RegExp.plan
: juste regular expression matching. Accepts a parameter named pattern
which is a regular expression in Java syntax.re-upload and test all the alvis components
Must now use OMTD-SHARE V3.0.0
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