This project forked from imswitch/imswitch
ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
Home Page: https://imswitch.readthedocs.io/
License: GNU General Public License v3.0
This will be a thread to collect the WIP for slide scanning in ImSwitch with our XYZ microscope.
open-slide is the defacto standard for things like deepzoom and tiled datastorage. It has a python interface https://openslide.org/api/python/Motivational graphic
Were you able to solve the issue with the z-axis speed control (i.e. currently moving 1000 um or 100 um at 10 um/s takes the same amount of time)?
Take 3 images at three phases and accumulate before displaying please @beniroquai
@renerichter how can we ensure that ImSwitch always a matching version of the UC2-REST library? I once had a submodule approach..would that be the way to go?
read issue
Thanks @beniroquai
Hi @beniroquai !
A couple of things I noticed which might improve maintainability and readability. Happy to further discuss any of these suggestions:
Firstly, an issue of casing in Python, common to most of the repository. As an example, in PositionerManager it would be more "Pythonic" to have no camelCase for properties and methods like forPositioning, which should look like:
@property
def for_positioning(self) -> bool:
""" Whether the positioner is used for manual positioning. """
return self.__for_positioning
It might make sense for the front-end, but it would be more consistent at least in the back-end.
A nice "pythonic" one-liner for simplifying .json parsing and setting a default value that simplifies this:
if positionerInfo.managerProperties.get('stepsizeX') is not None:
self.homeSpeedX= positionerInfo.managerProperties['homeSpeedX']
else:
self.homeSpeedX= 15000
would look like:
self.homeSpeedX= positionerInfo.managerProperties.get("homeSpeedX", 15000) # Checks for key "homeSpeedX" and if None return default value 15000.
Similar to this, in the managerProperties (example_uc2_labmaite.json) of the ESP32StageManager things could be simplified with dicts, which are more compatible to the position attribute, and then nicely parsed with the previous 1-liner:
{
"positioners": {
"ESP32Stage": {
"managerName": "ESP32StageManager",
"managerProperties": {
"rs232device": "ESP32",
"stepsize" = {"X": 0.3125,"Y": 0.3125,"Z": 0.3125},
"home_speed" = {"X": 15000,"Y": 15000,"Z": 15000},
"home_direction" = {"X": -1,"Y": -1,"Z": 1},
"backlash": ...
}
}
Then, the initialization would look like:
self.homeSpeed = positionerInfo.managerProperties.get("homeSpeed", {axis: 15000 for axis in self.__axes })
Including the self.setupMotor, which could be called just once, taking advantage of the axes attribute:
def setupMotor(self, minPos, maxPos, stepSize, backlash, axis):
for axis in self.__axes:
self._motor.setup_motor(axis=axis, minPos=minPos[axis], maxPos=maxPos[axis], stepSize=stepSize[axis], backlash=backlash[axis])
Kind regards!
I attempted to update the software today, but encountered an error message saying that a specific BAK file could not be found when attempting to update. Previous updates did work, but when he tried yesterday and today they did not. (it could also be a file naming error maybe, I know not all filenames accepted on a apple device work for windows devices)
See Issue
Bug description
UC2ConfigManager overwrites settings of ESP on startup
How to reproduce
Steps to reproduce the behavior:
I have outcommented this section https://github.com/openUC2/ImSwitch/blob/master/imswitch/imcontrol/controller/controllers/UC2ConfigController.py#L32
Not sure if we ever need this other than reconnecting to the board if the connection was lost..
When installing this repo from source, a few dependencies are missing. How can we ensure they are getting installed properly (asking for a friend :D @AZehrer)..
One example:
https://github.com/openUC2/ImSwitch/blob/master/setup.cfg#L64
Bug description
When continous taking images, the first run always has the correct pattern display order, from the second run the pattern order will be in a missed sequence. e.g. dir0ph2 ... dir1ph0/1/2 ... at the end dir0ph0/1
See Issue
This is a known issue for a conda installation too, but the pip installation should work. We need to somehow tell the pyinstaller script the location of the daheng DLL. It's failing here:
https://github.com/openUC2/ImSwitch/actions/runs/3120117702/jobs/5060485139#step:5:66
@renerichter any thoughts?
Xaviers last response:
Alright! Thanks for reporting the bug btw. I think this manager I have not done it myself so I'm not sure, maybe it's from the UC2 repo? Can you take a look at getChunk and make sure that it's returning the new list of frames, in the camera manager? getChunk is the one that is called from the RecordingManager so that would be the one that is failing in my opinion
Probably more useful to post the issue in this repository.
@beniroquai
Supply different SIM gratings for different wavelengths accordingly
The snap image can only be done once without changing the filename.
Also the snapimage() in imscript can only be done once.
Did something change in imswitch?
best wishes, AZ
Add gui element to select reconstruction algorithm
Either choose the napari-sim or the MCSIM from @ptbrown1729 from https://github.com/QI2lab/mcSIM
See Issue
Is there a possibility to add additional file saving formats? We enjoy the high resolution of the HDF5 images, however the files are rather unwieldly to work with, whereas mp4 files are much easier to work with but very low quality. If there was another possibility, could that be added?
Create GUI elememet that enables uploading latest firmware for uc2
Hi,
After upgrading to the latest version of ImSwitch ('$ pip install —upgrade imswitch', version 2.0.0), I can't move x y or z in the positioner widget by clicking related "+" or "--" button. The reported message is below:
The code around the line of " if axis == "X": speed = self.speed["X"]" in ESP32StageManager.py are:
Hopefully, it is sufficient to help me to solve this issue. Thanks in advance!
Kinds,
Yuhao
See Issue
I'm trying to build the microscope for an incubator and I know it uses a rapberry, following the instructions I can't install the GUI and I saw that they moved to IMSWITCH, but unlike the GUI there is no tutorial for beginners on how to install it on the raspberry, no I know if someone could help me. Please
@KillerInk we have a working installation with the following specs
Package: nvidia-jetpack
Version: 4.6-b199
Architecture: arm64
Maintainer: NVIDIA Corporation
Installed-Size: 194
Depends: nvidia-cuda (= 4.6-b199), nvidia-opencv (= 4.6-b199), nvidia-cudnn8 (= 4.6-b199), nvidia-tensorrt (= 4.6-b199), nvidia-visionworks (= 4.6-b199), nvidia-container (= 4.6-b199), nvidia-vpi (= 4.6-b199), nvidia-l4t-jetson-multimedia-api (>> 32.6-0), nvidia-l4t-jetson-multimedia-api (<< 32.7-0)
Homepage: http://developer.nvidia.com/jetson
Priority: standard
Section: metapackages
Filename: pool/main/n/nvidia-jetpack/nvidia-jetpack_4.6-b199_arm64.deb
Size: 29368
SHA256: 69df11e22e2c8406fe281fe6fc27c7d40a13ed668e508a592a6785d40ea71669
SHA1: 5c678b8762acc54f85b4334f92d9bb084858907a
MD5sum: 1b96cd72f2a434e887f98912061d8cfb
Description: NVIDIA Jetpack Meta Package
Description-md5: ad1462289bdbc54909ae109d1d32c0a8
aiobotocore==2.1.2
aiohttp==3.8.6
aioice==0.9.0
aioitertools==0.11.0
aiortc==1.5.0
aiosignal==1.3.1
alabaster==0.7.12
anyio==3.7.1
appdirs==1.4.4
asciitree==0.3.3
async-timeout==4.0.2
asynctest==0.13.0
attrs==21.4.0
av==10.0.0
Babel==2.9.1
backcall==0.2.0
bitstring==4.0.1
botocore==1.23.24
cached-property==1.5.2
cachey==0.2.1
certifi==2021.10.8
cffi==1.15.1
charset-normalizer==2.0.10
click==8.1.7
cloudpickle==2.0.0
coloredlogs==15.0.1
colour-science==0.3.16
cryptography==41.0.5
cycler==0.11.0
dask==2022.2.0
dataclasses-json==0.5.6
debugpy==1.5.1
decorator==5.1.1
distributed==2022.2.0
dnspython==2.3.0
docstring-parser==0.13
docutils==0.17.1
ecdsa==0.18.0
entrypoints==0.3
esptool==4.5.1
exceptiongroup==1.2.0
fastapi==0.103.2
fasteners==0.19
fonttools==4.28.5
freetype-py==2.2.0
frozenlist==1.3.3
fsspec==2022.1.0
gevent==21.12.0
gevent-websocket==0.10.1
google-crc32c==1.5.0
greenlet==1.1.2
h11==0.14.0
h5py==3.6.0
HeapDict==1.0.1
hidapi==0.13.1
hsluv==5.0.2
humanfriendly==10.0
idna==3.3
ifaddr==0.2.0
imageio==2.13.5
imagesize==1.3.0
imjoy-rpc==0.5.46
importlib-metadata==4.10.0
importlib-resources==5.4.0
-e git+https://github.com/openuc2/imswitch@e7d412708e9359924a884edf4b4fd3a8e0c4097b#egg=ImSwitch
ipykernel==6.7.0
ipython==7.31.0
ipython-genutils==0.2.0
jedi==0.18.1
Jinja2==3.0.3
jmespath==0.10.0
joblib==1.3.2
jsonschema==4.4.0
jupyter-client==7.1.1
jupyter-core==4.9.1
kiwisolver==1.3.2
lantz-core==0.5.3
lantz-drivers==0.5.2
lantz-qt==0.5.3
lantz-sims==0.5.2
lantzdev==0.5.2
locket==0.2.1
luddite==1.0.2
magicgui==0.3.4
MarkupSafe==2.0.1
marshmallow==3.14.1
marshmallow-enum==1.5.1
matplotlib==3.5.1
matplotlib-inline==0.1.3
microscope==0.6.0
msgpack==1.0.5
multidict==6.0.4
mypy-extensions==0.4.3
napari==0.4.7
napari-console==0.0.4
-e git+https://github.com/openUC2/napari-live-recording@a143adc764e786ed9659abbd607ce3c74bc69591#egg=napari_live_recording
napari-plugin-engine==0.2.0
napari-svg==0.1.6
nest-asyncio==1.5.4
networkx==2.6.3
nidaqmx==0.5.7
numcodecs==0.10.2
numpy==1.21.5
numpydoc==1.1.0
ome-types==0.4.3
ome-zarr==0.8.3
opencv-python==4.5.5.62
openflexure-microscope-client==0.1.7
packaging==21.3
parso==0.8.3
partd==1.2.0
pco==0.1.3
pexpect==4.8.0
pickleshare==0.7.5
Pillow==9.0.0
pimpmyclass==0.4.3
Pint==0.18
progressbar2==4.2.0
prompt-toolkit==3.0.24
psutil==5.9.0
psygnal==0.2.0
ptyprocess==0.7.0
pulsestreamer==1.6.0
pycparser==2.21
pydantic==1.9.0
pydantic-compat==0.1.2
pyee==10.0.2
Pygments==2.11.2
pylibsrtp==0.8.0
pymba==0.3.7
PyOpenGL==3.1.5
pyOpenSSL==23.3.0
pyparsing==3.0.6
PyQt5==5.12.3
PyQt5_sip==4.19.18
PyQtChart==5.12
pyqtgraph==0.12.3
PyQtWebEngine==5.12.1
Pyro4==4.82
Pyro5==5.14
pyrsistent==0.18.1
pyserial==3.5
PySignal==1.1.1
python-dateutil==2.8.2
python-utils==3.5.2
pytz==2021.3
PyVISA==1.11.3
PyWavelets==1.1.1
PyYAML==6.0
pyzmq==22.3.0
QDarkStyle==3.0.3
qtconsole==5.2.2
QtPy==2.0.0
reedsolo==1.6.0
requests==2.28.2
s3fs==2022.1.0
scikit-image==0.19.1
scikit-learn==1.0.2
scipy==1.7.3
Send2Trash==1.8.0
Serialize==0.2.1
serpent==1.41
shortuuid==1.0.11
six==1.16.0
sniffio==1.3.0
snowballstemmer==2.2.0
sortedcontainers==2.4.0
Sphinx==4.4.0
sphinxcontrib-applehelp==1.0.2
sphinxcontrib-devhelp==1.0.2
sphinxcontrib-htmlhelp==2.0.0
sphinxcontrib-jsmath==1.0.1
sphinxcontrib-qthelp==1.0.3
sphinxcontrib-serializinghtml==1.1.5
starlette==0.27.0
stringparser==0.5
tblib==2.0.0
threadpoolctl==3.1.0
tifffile==2021.11.2
tinyrpc==1.1.0
toolz==0.11.2
tornado==6.1
traitlets==5.1.1
typing-inspect==0.7.1
typing_extensions==4.7.1
-e git+https://github.com/openUC2/UC2-REST/@c5895af92195879be500ed30567c2880d1f9c6cf#egg=UC2_REST
urllib3==1.26.8
useq-schema==0.1.5
uvicorn==0.22.0
visa==1.0.0
vispy==0.9.4
wcwidth==0.2.5
websockets==11.0.3
wrapt==1.13.3
xsdata==23.7
yarl==1.9.3
zarr==2.12.0
zeroconf==0.39.4
zict==2.2.0
zipp==3.7.0
zope.event==4.5.0
zope.interface==5.4.0
The question remains - why does it work here. Its an older installation, so Im not 100 percent sure how I installed it..
(imswitch) uc2@uc2-desktop:~$ which python
/home/uc2/miniforge3/envs/imswitch/bin/python
Its a 4GB board.
Bug description
Imswitch not starting due to failing blockly.
How to reproduce
Steps to reproduce the behavior:
mamba activate imswitch environment run imswitch commandExpected behavior
Assumed all modules (including blockly) to start properly.
Output
2023-01-12 16:11:02 ERROR [main] Failed to initialize module imblockly
2023-01-12 16:11:02 ERROR [main] Traceback (most recent call last):
File "[...]ImSwitch/imswitch/__main__.py", line 58, in main
view, controller = modulePkg.getMainViewAndController(
File "[...]ImSwitch/imswitch/imblockly/__init__.py", line 55, in getMainViewAndController
from .controller import ImScrMainController
File "[...]ImSwitch/imswitch/imblockly/controller/__init__.py", line 1, in <module>
from .ImScrMainController import ImScrMainController
File "[...]ImSwitch/imswitch/imblockly/controller/ImScrMainController.py", line 5, in <module>
from .ImScrMainViewController import ImScrMainViewController
File "[...]ImSwitch/imswitch/imblockly/controller/ImScrMainViewController.py", line 2, in <module>
from .EditorController import EditorController
File "[...]ImSwitch/imswitch/imblockly/controller/EditorController.py", line 5, in <module>
from imswitch.imblockly.view import guitools
File "[...]ImSwitch/imswitch/imblockly/view/__init__.py", line 1, in <module>
from .ImScrMainView import ImScrMainView
File "[...]ImSwitch/imswitch/imblockly/view/ImScrMainView.py", line 4, in <module>
from .BlocklyView import BlocklyView
File "[...]ImSwitch/imswitch/imblockly/view/BlocklyView.py", line 3, in <module>
from PyQt5.QtWebEngineWidgets import *
ImportError: QtWebEngineWidgets must be imported before a QCoreApplication instance is created
[1] 70295 segmentation fault imswitch
/opt/homebrew/Caskroom/mambaforge/base/envs/imswitch/lib/python3.9/multiprocessing/resource_tracker.py:216: UserWarning: resource_tracker: There appear to be 1 leaked semaphore objects to clean up at shutdown
warnings.warn('resource_tracker: There appear to be %d '
Environment
Hi @beniroquai !
A couple of things I noticed which might improve maintainability and readability. Happy to further discuss any of these suggestions:
self._position = self.getPosition() overwrites initialPosition in the PositionerManager parent initialization:class ESP32StageManager(PositionerManager):
def __init__(self, positionerInfo, name, **lowLevelManagers):
super().__init__(positionerInfo, name, initialPosition={
axis: 0 for axis in positionerInfo.axes
})
Shouldn't it then be completely avoided in the PositionerManager class?
@abstractmethod
def set_position(self, pos, axis):
pass
And an example for an inherited class like the ESP32StageManager could look like:
def set_position(self, value, axis):
self._motor.set_position(axis=axis, position=value)
self._position[axis] = value
def is_homed(self) -> Dict[str, bool]:
""" The home of each axis. This is a dict in the format
``{ axis: homed }``. """
return self._is_homed
home() should be a method to do what doHome() does in the ESP32StageManager. Same goes for stop which should be an is_stopped property, while stop() should be an abstract method like home().
In general, there are many if-clauses that depend on the axes dictionary and are called with just one axis. Like for example again the home method: this should home the complete stage, while another more specific method like home_axis(self, axis) could be used instead:
def home(self):
self.home_xyz() # or actually self._stage.home()
Kind regards!
Most likely resolution of PWM not matching json value.
We have to make sure this path is always correct. Looks hardcoded:
https://github.com/openUC2/ImSwitch/blob/master/imswitch/imcontrol/model/interfaces/gxipy/gxwrapper.py#L17
Add gui element to save the reconstructed SR images to disk
Scneario:
Someone attempts to update the software, but encounters an error message saying that a specific BAK file could not be found when attempting to update. Previous updates did work, but when he tried yesterday and today they did not. (it could also be a file naming error maybe, I know not all filenames accepted on a apple device work for windows devices)
@renerichter @ranranking would it make sense to run a thread tha checks if the ESP32 is:
and does the following:
When I run the imswitch, it was opening with this 'Failed to load module' error.
MCTInfo is in the MCTManger.py file and pixelSize is mentioned here but it is not defined in SetupInfo.py in line 178.
Solution is define pixelSize was defined in class MCTInfo: in SetupInfo.py
In order to home the axes we need this feature
@renerichter (first good challenge? ;) )
Black bars appear..
Hi @beniroquai !
The ESP32StageManager doesn't use the base definition (doesn't respect the abstract methods) of the PositionerManager, even when it inherits from it.
The move method in the ESP32StageManager switches dist for value, I guess to include the is_absolute option, but conflicting with the abstract method.
In general, the ESP32Stage interface could include another abstraction layer that integrates the motor and home modules, in order to integrate it in the manager:
self._motor = self._rs232manager._esp32.motor
self._homeModule = self._rs232manager._esp32.home
These 2 lines would be simplified with the following line, which includes the business logic of the complete XYZ stage:
self._stage = self._rs232manager._esp32.stage
This would follow the convention of the Manager class instantiating a low-level interface, like for example in this LantzLaserManager, where the Manager instantiates a self._laser:
class LantzLaserManager(LaserManager):
def __init__(self, laserInfo, name, isBinary, valueUnits, valueDecimals, driver,
**_lowLevelManagers):
self.__logger = initLogger(self, instanceName=name)
ports = laserInfo.managerProperties['digitalPorts']
# Init laser
self._laser = LantzLaser(driver, ports)
Kind regards!
Ensure the processor objects are properly assigned
@renerichter we can ship the app with drivers and install it through python subprocesses. The problem will be administrative rights.
We can execute the following:
(from https://stackoverflow.com/questions/31050040/install-windows-drivers-using-python)
C:\WINDOWS\system32>pnputil.exe -i -a C:\Users\UC2\Downloads\CP210x_Universal_Windows_Driver\silabser.inf
Microsoft-PnP-Hilfsprogramm
Verarbeitungsinf.: silabser.inf
Der Treiber wurde erfolgreich installiert.
Das Treiberpaket wurde erfolgreich hinzugefügt.
Veröffentlichter Name: oem326.inf
Versuche gesamt: 1
Anzahl erfolgreicher Importe: 1
C:\WINDOWS\system32>
in python:
import subprocess
>>> subprocess.Popen('pnputil.exe -i -a C:\\Users\\UC2\\Downloads\\CP210x_Universal_Windows_Driver\\silabser.inf')
<subprocess.Popen object at 0x00000259964CB0C8>in a terminal, but it won't work if you don't open it with writing modes. Not sure how this would work in python.
Hey @kasasxav, I guess I'm getting confused over the use of the Worker-updater strategy in the SIMController again. We are collecting 9 images and want to calibrate the fourier peaks and then process them. I'm doing it wrong ;-)
Would you mind helping me with this line:
https://github.com/openUC2/ImSwitch/blob/SIM_PCO/imswitch/imcontrol/controller/controllers/SIMController.py#L309
I guess we somehow want to call this in the worker in the background, or?
Thank you !!! :)
Bug description
When installating UC2-ImSwitch version using a mixture of Option B and Option C, because option B description seems incomplete, the post installation of the commented packages (pypylon, QScintila, PyQtWebEngine and PyQt5) fails.
How to reproduce
conda create -n imswitch python=3.9
conda install -c conda-forge napari
nano setup.cfg
# comment pypylon and QScintila and PyQtWebEngine and PyQT5
pip install --no-deps <LIB_NAME>
Expected behavior
Expected to smoothly be installed.
Environment
active environment : imswitch
active env location : /opt/homebrew/Caskroom/mambaforge/base/envs/imswitch
shell level : 2
user config file : /Users/.../.condarc
populated config files : /opt/homebrew/Caskroom/mambaforge/base/.condarc
conda version : 22.9.0
conda-build version : not installed
python version : 3.10.6.final.0
virtual packages : __osx=13.1=0
__unix=0=0
__archspec=1=arm64
base environment : /opt/homebrew/Caskroom/mambaforge/base (writable)
conda av data dir : /opt/homebrew/Caskroom/mambaforge/base/etc/conda
conda av metadata url : None
channel URLs : https://conda.anaconda.org/conda-forge/osx-arm64
https://conda.anaconda.org/conda-forge/noarch
package cache : /opt/homebrew/Caskroom/mambaforge/base/pkgs
/Users/.../.conda/pkgs
envs directories : /opt/homebrew/Caskroom/mambaforge/base/envs
/Users/.../.conda/envs
platform : osx-arm64
user-agent : conda/22.9.0 requests/2.28.1 CPython/3.10.6 Darwin/22.2.0 OSX/13.1
UID:GID : 501:20
netrc file : None
offline mode : False
Packages
output of mamba list
_ipython_minor_entry_point 8.7.0 h8cf3c4a_0 conda-forge
alabaster 0.7.12 py_0 conda-forge
aom 3.5.0 h7ea286d_0 conda-forge
app-model 0.1.1 pyhd8ed1ab_0 conda-forge
appdirs 1.4.4 pyh9f0ad1d_0 conda-forge
appnope 0.1.3 pyhd8ed1ab_0 conda-forge
asciitree 0.3.3 py_2 conda-forge
asttokens 2.2.1 pyhd8ed1ab_0 conda-forge
attrs 22.2.0 pyh71513ae_0 conda-forge
babel 2.11.0 pyhd8ed1ab_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 pyhd8ed1ab_3 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
blosc 1.21.3 h1d6ff8b_0 conda-forge
bokeh 2.4.3 pyhd8ed1ab_3 conda-forge
brotli 1.0.9 h1a8c8d9_8 conda-forge
brotli-bin 1.0.9 h1a8c8d9_8 conda-forge
brotlipy 0.7.0 py39h02fc5c5_1005 conda-forge
brunsli 0.1 h9f76cd9_0 conda-forge
bzip2 1.0.8 h3422bc3_4 conda-forge
c-ares 1.18.1 h3422bc3_0 conda-forge
c-blosc2 2.6.1 h303ed30_0 conda-forge
ca-certificates 2022.12.7 h4653dfc_0 conda-forge
cachey 0.2.1 pyh9f0ad1d_0 conda-forge
certifi 2022.12.7 pyhd8ed1ab_0 conda-forge
cffi 1.15.1 py39h7e6b969_3 conda-forge
cfitsio 4.2.0 h2f961c4_0 conda-forge
charls 2.3.4 hbdafb3b_0 conda-forge
charset-normalizer 2.1.1 pyhd8ed1ab_0 conda-forge
click 8.1.3 unix_pyhd8ed1ab_2 conda-forge
cloudpickle 2.2.0 pyhd8ed1ab_0 conda-forge
colorama 0.4.6 pyhd8ed1ab_0 conda-forge
comm 0.1.2 pyhd8ed1ab_0 conda-forge
commonmark 0.9.1 py_0 conda-forge
cryptography 39.0.0 py39he2a39a8_0 conda-forge
cytoolz 0.12.0 py39h02fc5c5_1 conda-forge
dask 2022.12.1 pyhd8ed1ab_0 conda-forge
dask-core 2022.12.1 pyhd8ed1ab_0 conda-forge
dataclasses 0.8 pyhc8e2a94_3 conda-forge
dav1d 1.0.0 he4db4b2_1 conda-forge
debugpy 1.6.4 py39h23fbdae_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
distributed 2022.12.1 pyhd8ed1ab_0 conda-forge
docstring_parser 0.15 pyhd8ed1ab_0 conda-forge
docutils 0.17.1 py39h2804cbe_3 conda-forge
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
executing 1.2.0 pyhd8ed1ab_0 conda-forge
expat 2.5.0 hb7217d7_0 conda-forge
fasteners 0.17.3 pyhd8ed1ab_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.14.1 h82840c6_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
freetype 2.12.1 hd633e50_1 conda-forge
freetype-py 2.3.0 pyhd8ed1ab_0 conda-forge
fsspec 2022.11.0 pyhd8ed1ab_0 conda-forge
future 0.18.2 pyhd8ed1ab_6 conda-forge
gettext 0.21.1 h0186832_0 conda-forge
giflib 5.2.1 h27ca646_2 conda-forge
glib 2.74.1 hb5ab8b9_1 conda-forge
glib-tools 2.74.1 hb5ab8b9_1 conda-forge
gst-plugins-base 1.21.3 h8b7775e_1 conda-forge
gstreamer 1.21.3 hcb7b3dd_1 conda-forge
heapdict 1.0.1 py_0 conda-forge
hsluv 5.0.2 pyh44b312d_0 conda-forge
icu 70.1 h6b3803e_0 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
imagecodecs 2022.12.24 py39h18f4f30_0 conda-forge
imageio 2.23.0 pyhfa7a67d_0 conda-forge
imagesize 1.4.1 pyhd8ed1ab_0 conda-forge
importlib-metadata 6.0.0 pyha770c72_0 conda-forge
importlib_resources 5.10.2 pyhd8ed1ab_0 conda-forge
in-n-out 0.1.6 pyhd8ed1ab_0 conda-forge
ipykernel 6.19.4 pyh736e0ef_0 conda-forge
ipython 8.7.0 pyhd1c38e8_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
jedi 0.18.2 pyhd8ed1ab_0 conda-forge
jinja2 3.1.2 pyhd8ed1ab_1 conda-forge
jpeg 9e he4db4b2_2 conda-forge
jsonschema 4.17.3 pyhd8ed1ab_0 conda-forge
jupyter_client 7.4.8 pyhd8ed1ab_0 conda-forge
jupyter_core 5.1.1 py39h2804cbe_0 conda-forge
jxrlib 1.1 h27ca646_2 conda-forge
kiwisolver 1.4.4 py39haaf3ac1_1 conda-forge
krb5 1.20.1 h69eda48_0 conda-forge
lcms2 2.14 h481adae_1 conda-forge
lerc 4.0.0 h9a09cb3_0 conda-forge
libaec 1.0.6 hbdafb3b_0 conda-forge
libavif 0.11.1 h3d80962_0 conda-forge
libblas 3.9.0 16_osxarm64_openblas conda-forge
libbrotlicommon 1.0.9 h1a8c8d9_8 conda-forge
libbrotlidec 1.0.9 h1a8c8d9_8 conda-forge
libbrotlienc 1.0.9 h1a8c8d9_8 conda-forge
libcblas 3.9.0 16_osxarm64_openblas conda-forge
libclang 14.0.6 default_h81a5282_0 conda-forge
libclang13 14.0.6 default_he70ec0d_0 conda-forge
libcurl 7.87.0 h9049daf_0 conda-forge
libcxx 14.0.6 h2692d47_0 conda-forge
libdeflate 1.14 h1a8c8d9_0 conda-forge
libedit 3.1.20191231 hc8eb9b7_2 conda-forge
libev 4.33 h642e427_1 conda-forge
libffi 3.4.2 h3422bc3_5 conda-forge
libgfortran 5.0.0 11_3_0_hd922786_27 conda-forge
libgfortran5 11.3.0 hdaf2cc0_27 conda-forge
libglib 2.74.1 h4646484_1 conda-forge
libiconv 1.17 he4db4b2_0 conda-forge
libjpeg-turbo 2.1.4 h1a8c8d9_0 conda-forge
liblapack 3.9.0 16_osxarm64_openblas conda-forge
libllvm14 14.0.6 hf6e71e7_1 conda-forge
libnghttp2 1.47.0 h519802c_1 conda-forge
libogg 1.3.4 h27ca646_1 conda-forge
libopenblas 0.3.21 openmp_hc731615_3 conda-forge
libopus 1.3.1 h27ca646_1 conda-forge
libpng 1.6.39 h76d750c_0 conda-forge
libpq 15.1 h1a28acd_2 conda-forge
libsodium 1.0.18 h27ca646_1 conda-forge
libsqlite 3.40.0 h76d750c_0 conda-forge
libssh2 1.10.0 h7a5bd25_3 conda-forge
libtiff 4.5.0 heb92581_0 conda-forge
libvorbis 1.3.7 h9f76cd9_0 conda-forge
libwebp-base 1.2.4 h57fd34a_0 conda-forge
libxcb 1.13 h9b22ae9_1004 conda-forge
libzlib 1.2.13 h03a7124_4 conda-forge
libzopfli 1.0.3 h9f76cd9_0 conda-forge
llvm-openmp 15.0.6 h7cfbb63_0 conda-forge
locket 1.0.0 pyhd8ed1ab_0 conda-forge
lz4 4.2.0 py39hb35ce34_0 conda-forge
lz4-c 1.9.3 hbdafb3b_1 conda-forge
magicgui 0.6.1 pyhd8ed1ab_0 conda-forge
markupsafe 2.1.1 py39h02fc5c5_2 conda-forge
matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge
msgpack-python 1.0.4 py39haaf3ac1_1 conda-forge
mysql-common 8.0.31 h518ea0a_0 conda-forge
mysql-libs 8.0.31 hcb599eb_0 conda-forge
napari 0.4.17 pyh275ddea_0_pyqt conda-forge
napari-console 0.0.7 pyhd8ed1ab_0 conda-forge
napari-plugin-engine 0.2.0 pyhd8ed1ab_2 conda-forge
napari-svg 0.1.6 pyhd8ed1ab_1 conda-forge
ncurses 6.3 h07bb92c_1 conda-forge
nest-asyncio 1.5.6 pyhd8ed1ab_0 conda-forge
networkx 2.8.8 pyhd8ed1ab_0 conda-forge
npe2 0.6.1 pyhd8ed1ab_1 conda-forge
nspr 4.35 hb7217d7_0 conda-forge
nss 3.78 h1483a63_0 conda-forge
numcodecs 0.11.0 py39h23fbdae_1 conda-forge
numpy 1.24.1 py39hefdcf20_0 conda-forge
numpydoc 1.5.0 pyhd8ed1ab_0 conda-forge
openjpeg 2.5.0 hbc2ba62_2 conda-forge
openssl 3.0.7 h03a7124_1 conda-forge
packaging 22.0 pyhd8ed1ab_0 conda-forge
pandas 1.5.2 py39hde7b980_0 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
partd 1.3.0 pyhd8ed1ab_0 conda-forge
pcre2 10.40 hb34f9b4_0 conda-forge
pep517 0.13.0 pyhd8ed1ab_0 conda-forge
pexpect 4.8.0 pyh1a96a4e_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pillow 9.4.0 py39h8bbe137_0 conda-forge
pint 0.20.1 pyhd8ed1ab_0 conda-forge
pip 22.3.1 pyhd8ed1ab_0 conda-forge
pkgutil-resolve-name 1.3.10 pyhd8ed1ab_0 conda-forge
platformdirs 2.6.2 pyhd8ed1ab_0 conda-forge
ply 3.11 py_1 conda-forge
pooch 1.6.0 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.36 pyha770c72_0 conda-forge
psutil 5.9.4 py39h02fc5c5_0 conda-forge
psygnal 0.6.1 py39haaf3ac1_0 conda-forge
pthread-stubs 0.4 h27ca646_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pydantic 1.10.4 py39h02fc5c5_0 conda-forge
pygments 2.14.0 pyhd8ed1ab_0 conda-forge
pyopengl 3.1.6 pyhd8ed1ab_1 conda-forge
pyopenssl 23.0.0 pyhd8ed1ab_0 conda-forge
pyqt 5.15.7 py39h7fba1b6_2 conda-forge
pyqt5-sip 12.11.0 py39h23fbdae_2 conda-forge
pyrsistent 0.19.3 py39h02fc5c5_0 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
python 3.9.15 hea58f1e_0_cpython conda-forge
python-build 0.9.0 pyhd8ed1ab_1 conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python_abi 3.9 3_cp39 conda-forge
pytomlpp 1.0.11 py39haaf3ac1_1 conda-forge
pytz 2022.7 pyhd8ed1ab_0 conda-forge
pywavelets 1.3.0 py39h4d8bf0d_2 conda-forge
pyyaml 6.0 py39h02fc5c5_5 conda-forge
pyzmq 24.0.1 py39h0553236_1 conda-forge
qt-main 5.15.6 hda43d4a_5 conda-forge
qtconsole-base 5.4.0 pyha770c72_0 conda-forge
qtpy 2.3.0 pyhd8ed1ab_0 conda-forge
readline 8.1.2 h46ed386_0 conda-forge
requests 2.28.1 pyhd8ed1ab_1 conda-forge
rich 13.0.0 pyhd8ed1ab_0 conda-forge
scikit-image 0.19.3 py39hde7b980_2 conda-forge
scipy 1.9.3 py39h18313fe_2 conda-forge
setuptools 65.6.3 pyhd8ed1ab_0 conda-forge
shellingham 1.5.0 pyhd8ed1ab_0 conda-forge
sip 6.7.5 py39h23fbdae_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
snappy 1.1.9 h17c5cce_2 conda-forge
snowballstemmer 2.2.0 pyhd8ed1ab_0 conda-forge
sortedcontainers 2.4.0 pyhd8ed1ab_0 conda-forge
sphinx 4.5.0 pyh6c4a22f_0 conda-forge
sphinxcontrib-applehelp 1.0.2 py_0 conda-forge
sphinxcontrib-devhelp 1.0.2 py_0 conda-forge
sphinxcontrib-htmlhelp 2.0.0 pyhd8ed1ab_0 conda-forge
sphinxcontrib-jsmath 1.0.1 py_0 conda-forge
sphinxcontrib-qthelp 1.0.3 py_0 conda-forge
sphinxcontrib-serializinghtml 1.1.5 pyhd8ed1ab_2 conda-forge
sqlite 3.40.0 h2229b38_0 conda-forge
stack_data 0.6.2 pyhd8ed1ab_0 conda-forge
superqt 0.4.1 pyhd8ed1ab_0 conda-forge
tblib 1.7.0 pyhd8ed1ab_0 conda-forge
tifffile 2022.10.10 pyhd8ed1ab_0 conda-forge
tk 8.6.12 he1e0b03_0 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
toolz 0.12.0 pyhd8ed1ab_0 conda-forge
tornado 6.2 py39h02fc5c5_1 conda-forge
tqdm 4.64.1 pyhd8ed1ab_0 conda-forge
traitlets 5.8.0 pyhd8ed1ab_0 conda-forge
typer 0.4.2 pyhd8ed1ab_0 conda-forge
typing-extensions 4.4.0 hd8ed1ab_0 conda-forge
typing_extensions 4.4.0 pyha770c72_0 conda-forge
tzdata 2022g h191b570_0 conda-forge
urllib3 1.26.13 pyhd8ed1ab_0 conda-forge
vispy 0.11.0 py39h27142b3_1 conda-forge
wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
wheel 0.38.4 pyhd8ed1ab_0 conda-forge
wrapt 1.14.1 py39h02fc5c5_1 conda-forge
xorg-libxau 1.0.9 h27ca646_0 conda-forge
xorg-libxdmcp 1.1.3 h27ca646_0 conda-forge
xz 5.2.6 h57fd34a_0 conda-forge
yaml 0.2.5 h3422bc3_2 conda-forge
zarr 2.13.3 pyhd8ed1ab_0 conda-forge
zeromq 4.3.4 hbdafb3b_1 conda-forge
zfp 1.0.0 hb6e4faa_3 conda-forge
zict 2.2.0 pyhd8ed1ab_0 conda-forge
zipp 3.11.0 pyhd8ed1ab_0 conda-forge
zlib-ng 2.0.6 he4db4b2_0 conda-forge
zstd 1.5.2 h8128057_4 conda-forge
Error
e.g. for Package PyQtWebEngine in conda/mamba imswitch environment
pip install --no-deps PyQtWebEngine
Collecting PyQtWebEngine
Using cached PyQtWebEngine-5.15.6.tar.gz (48 kB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... error
error: subprocess-exited-with-error
× Preparing metadata (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [11 lines of output]
Querying qmake about your Qt installation...
These bindings will be built: QtWebEngineCore, QtWebEngine, QtWebEngineWidgets.
Generating the QtWebEngineCore bindings...
Generating the QtWebEngine bindings...
Generating the QtWebEngineWidgets bindings...
Generating the .pro file for the QtWebEngineCore module...
Generating the .pro file for the QtWebEngine module...
Generating the .pro file for the QtWebEngineWidgets module...
Generating the top-level .pro file...
Generating the Makefiles...
_in_process.py: '/opt/homebrew/Caskroom/mambaforge/base/envs/imswitch/bin/qmake -recursive PyQtWebEngine.pro' failed returning 3
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed
× Encountered error while generating package metadata.
╰─> See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
So it seems that qmake has a problem for metadata-generation, yet it worked nicely for all the other (qt-related) packages installed already. I wonder whether if using eg Python 3.8 (with a different set of qt-versions) could solve the problem?!
Bug description
The GUI appears very large even on a high DPI screen:
Expected behavior
The GUI should render in such a way that all widgets are visible
Environment
Additional context
My guess: It's an issue of Napari that "dictates" the screen resolution.
Setting OS environment variables using os did not resolve the issue? @renerichter
https://forum.image.sc/t/high-dpi-scaling-issue-when-running-napari-from-pycharm-console/44681/3
When I hit 'record' for a photometrics camera (PVCAM manager), imswitch hangs and dies eventually.
Eventually it crashes with this error:
2023-03-24 09:53:50 ERROR [PhotometricsManager -> WidefieldCamera] Traceback (most recent call last):
File "C:\Users\dirk\PycharmProjects\imswitch_hackathon\ImSwitch\imswitch\imcontrol\model\managers\detectors\DetectorManager.py", line 126, in updateLatestFrame
self.__image = self.getLatestFrame()
File "C:\Users\dirk\PycharmProjects\imswitch_hackathon\ImSwitch\imswitch\imcontrol\model\managers\detectors\PhotometricsManager.py", line 68, in getLatestFrame
return np.array(self._camera.poll_latest_frame()[0]['pixel_data'])
numpy.core._exceptions._ArrayMemoryError: Unable to allocate 19.5 MiB for an array with shape (3200, 3200) and data type uint16This happens when saving as an
I didn't check the other ones yet.
I also get the same problem when I run the example_record.py script. It sounds like imswitch is not stopping.
When installing uc2 version on jetson nano, I received an error ERROR: Could not build wheels for ImSwitchUC2, which is required to install pyproject.toml-based projects
also a warning WARNING: Built editable for ImSwitchUC2 is invalid: Wheel has unexpected file name: expected '-version-develop', got 'version-develop'
Installing from https://github.com/kasasxav/ImSwitch however works
Any ideas on this? Thank you.
We want to enable an automated updating mechanism if the version gets bug fixes.
For pyinstaller that means replacing the ImSwitch.exe is sufficient as long as no additional dependencies need to be installed.
I guess the xorg/xdisplay consumes quite some CPU/memory. If memory consumption by ImSwitch is rising, SWAP transfer occupies the CPU and the jetson barrels out over time.
ChatGPT says:
Yes, it is possible to run a PyQt app without an X desktop. To achieve this, you need to use a virtual framebuffer or headless display server.
Here are the steps you can follow to run a PyQt app without X desktop:
Install the xvfb package (or equivalent for your operating system) if it is not already installed.
Launch the virtual framebuffer using the following command:
python
Copy code
xvfb-run -s "-screen 0 1024x768x24" python your_app.py
Replace your_app.py with the filename of your PyQt app. The -screen 0 1024x768x24 option specifies the screen resolution and color depth.
Your PyQt app should now run in the virtual framebuffer.
Note that you may need to adjust the screen resolution and color depth to suit your needs. Additionally, some features of PyQt may not work without a display server, so you may need to modify your app accordingly.
We should try that. @kasasxav ;-)
Do you think it make sense that we can switch the live view between widefield and reconstruction? @beniroquai
c:\users\ando\documents\imswitch_dev\imswitch\imcommon\view\guitools\naparitools.py:103: FutureWarning: Public access to Window.qt_viewer is deprecated and will be removed in
v0.5.0. It is considered an "implementation detail" of the napari
application, not part of the napari viewer model. If your use case
requires access to qt_viewer, please open an issue to discuss.
napariViewer.window.qt_viewer.dockLayerList.show()
c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\view\widgets\ImageWidget.py:94: FutureWarning: Public access to Window.qt_viewer is deprecated and will be removed in
v0.5.0. It is considered an "implementation detail" of the napari
application, not part of the napari viewer model. If your use case
requires access to qt_viewer, please open an issue to discuss.
canvas=self.napariViewer.window.qt_viewer.canvas,
c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\view\widgets\ImageWidget.py:95: FutureWarning: Public access to Window.qt_viewer is deprecated and will be removed in
v0.5.0. It is considered an "implementation detail" of the napari
application, not part of the napari viewer model. If your use case
requires access to qt_viewer, please open an issue to discuss.
view=self.napariViewer.window.qt_viewer.view,
c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\view\widgets\ImageWidget.py:96: FutureWarning: Public access to Window.qt_viewer is deprecated and will be removed in
v0.5.0. It is considered an "implementation detail" of the napari
application, not part of the napari viewer model. If your use case
requires access to qt_viewer, please open an issue to discuss.
parent=self.napariViewer.window.qt_viewer.view.scene,
2022-10-20 11:07:29 DEBUG [ImConMainController] Initializing
2022-10-20 11:07:31 DEBUG [ImConMainController] Started server with URI -> PYRO:ImSwitchServer@:::54333
Object <imswitch.imcontrol.controller.server.ImSwitchServer.ImSwitchServer object at 0x000001F8D1405D30>:
uri = PYRO:ImSwitchServer@[::]:54333
Pyro daemon running.
2022-10-20 11:07:31 DEBUG [ESP32Manager -> ESP32] COM3
2022-10-20 11:07:33 DEBUG [ESP32Manager -> ESP32] Trying out port COM3 failed
2022-10-20 11:07:33 ERROR [ESP32Manager -> ESP32] name 'serialdevice' is not defined
2022-10-20 11:07:33 DEBUG [ESP32Manager -> ESP32] COM4
2022-10-20 11:07:38 DEBUG [ESP32Manager -> ESP32] Trying out port COM4 failed
2022-10-20 11:07:38 ERROR [ESP32Manager -> ESP32] could not open port 'COM4': OSError(22, 'The semaphore timeout period has expired.', None, 121)
2022-10-20 11:07:38 DEBUG [ESP32Manager -> ESP32] No USB device connected! Using DUMMY!
2022-10-20 11:07:38 DEBUG [ESP32Manager -> ESP32] COM3
2022-10-20 11:07:40 DEBUG [ESP32Manager -> ESP32] Trying out port COM3 failed
2022-10-20 11:07:40 ERROR [ESP32Manager -> ESP32] name 'serialdevice' is not defined
2022-10-20 11:07:40 DEBUG [ESP32Manager -> ESP32] COM4
2022-10-20 11:07:45 DEBUG [ESP32Manager -> ESP32] Trying out port COM4 failed
2022-10-20 11:07:45 ERROR [ESP32Manager -> ESP32] could not open port 'COM4': OSError(22, 'The semaphore timeout period has expired.', None, 121)
2022-10-20 11:07:45 DEBUG [ESP32Manager -> ESP32] No USB device connected! Using DUMMY!
2022-10-20 11:07:46 DEBUG [AVManager -> WidefieldCamera] Trying to initialize Allied Vision camera 1
2022-10-20 11:07:47 DEBUG [AVManager -> WidefieldCamera] camera connected
2022-10-20 11:07:47 INFO [AVManager -> WidefieldCamera] Initialized camera, model: AVCamera
2022-10-20 11:07:47 WARNING [AVManager -> WidefieldCamera] Property image_width does not exist
2022-10-20 11:07:47 WARNING [AVManager -> WidefieldCamera] Property image_height does not exist
2022-10-20 11:07:47 ERROR [AVManager -> WidefieldCamera] Other error.
2022-10-20 11:07:47 ERROR [AVManager -> WidefieldCamera] PixelFormat
2022-10-20 11:07:47 DEBUG [AVManager -> WidefieldCamera] Value not available?
10-20-2022 11:07:48.041 [T] cCameraActor - failed to setup features
2022-10-20 11:07:48 DEBUG [AVManager -> WidefieldCamera] A multiple registers read or write was partially completed.
2022-10-20 11:07:48 DEBUG [ImConMainController] Shutting down
2022-10-20 11:07:48 ERROR [ExceptionHandler] Traceback (most recent call last):
File "c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\__init__.py", line 54, in getMainViewAndController
controller = ImConMainController(options, setupInfo, view, moduleCommChannel)
File "c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\controller\ImConMainController.py", line 37, in __init__
self.__masterController = MasterController(self.__setupInfo, self.__commChannel,
File "c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\controller\MasterController.py", line 26, in __init__
self.detectorsManager = DetectorsManager(self.__setupInfo.detectors, updatePeriod=100,
File "c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\model\managers\DetectorsManager.py", line 21, in __init__
MultiManager.__init__(self, detectorInfos, 'detectors', **lowLevelManagers)
File "c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\model\managers\MultiManager.py", line 26, in __init__
self._subManagers[managedDeviceName] = manager(
File "c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\model\managers\detectors\AVManager.py", line 29, in __init__
self._camera.setPropertyValue(propertyName, propertyValue)
File "c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\model\interfaces\avcamera.py", line 202, in setPropertyValue
self.start_live()
File "c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\model\interfaces\avcamera.py", line 60, in start_live
self.camera.start_frame_acquisition()
File "C:\Users\Ando\Anaconda3\envs\imswitch39\lib\site-packages\pymba\camera.py", line 241, in start_frame_acquisition
raise VimbaException(VimbaException.ERR_INVALID_CAMERA_MODE)
pymba.vimba_exception.VimbaException: Invalid camera mode for the requested operation.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\controller\ImConMainController.py", line 140, in closeEvent
self.__factory.closeAllCreatedControllers()
AttributeError: 'ImConMainController' object has no attribute '_ImConMainController__factory'
2022-10-20 11:07:48 ERROR [main] Failed to initialize module imcontrol
2022-10-20 11:07:48 ERROR [main] Traceback (most recent call last):
File "c:\Users\Ando\Documents\ImSwitch_dev\imswitch\__main__.py", line 58, in main
view, controller = modulePkg.getMainViewAndController(
File "c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\__init__.py", line 57, in getMainViewAndController
raise e
File "c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\__init__.py", line 54, in getMainViewAndController
controller = ImConMainController(options, setupInfo, view, moduleCommChannel)
File "c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\controller\ImConMainController.py", line 37, in __init__
self.__masterController = MasterController(self.__setupInfo, self.__commChannel,
File "c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\controller\MasterController.py", line 26, in __init__
self.detectorsManager = DetectorsManager(self.__setupInfo.detectors, updatePeriod=100,
File "c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\model\managers\DetectorsManager.py", line 21, in __init__
MultiManager.__init__(self, detectorInfos, 'detectors', **lowLevelManagers)
File "c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\model\managers\MultiManager.py", line 26, in __init__
self._subManagers[managedDeviceName] = manager(
File "c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\model\managers\detectors\AVManager.py", line 29, in __init__
self._camera.setPropertyValue(propertyName, propertyValue)
File "c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\model\interfaces\avcamera.py", line 202, in setPropertyValue
self.start_live()
File "c:\users\ando\documents\imswitch_dev\imswitch\imcontrol\model\interfaces\avcamera.py", line 60, in start_live
self.camera.start_frame_acquisition()
File "C:\Users\Ando\Anaconda3\envs\imswitch39\lib\site-packages\pymba\camera.py", line 241, in start_frame_acquisition
raise VimbaException(VimbaException.ERR_INVALID_CAMERA_MODE)
pymba.vimba_exception.VimbaException: Invalid camera mode for the requested operation.
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